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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAGGAAAAGCAAGGGGGAATTGGGGATGGCGTCAAAGAGGATACAGAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGgtcttgctttctttcttttgcttgcttcttttgggcgtggattttgcagttctaggccatacatcttgcacaggagtcagatttttgtacatgtgcttct...

Basic information

species Oryza sativa
transcript LOC_Os01g46926.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86849404|gb|CI299631.1|CI299631
EST:     GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAG                         GTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATCATGGGTCCAT
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
EST: gi|55431330|gb|CV728679.1|CV728679
EST:     GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAG                         GTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
EST: gi|88729958|gb|CI753573.1|CI753573
EST:     GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAG                         GTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATNATGGGTCCAT
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
EST: gi|27577520|gb|CB000215.1|CB000215
EST:     CATCATGCAGTGCAG                         GTCCTGTTGGTGAAGACATG-TCCTACTGGCAGGCAACGATAATGGGTCCA
genomic: CATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCC-ACTGGCAGGCAACGATAATGGGTCCA
EST: gi|55438244|gb|CV732417.1|CV732417
EST:     GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAG                         GTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
EST: gi|38471522|gb|CF955653.1|CF955653
EST:     GAAGGAGCTCAAGGATCTGCAAAAGGATCCCCCTACATCATGCAGTGCAG                         GTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATNATGGGTCCAT
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
EST: gi|86902035|gb|CI300274.1|CI300274
EST:     GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAG                         GTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
EST: gi|33671124|gb|CF299363.1|CF299363
EST:     GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAG                         GTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
EST: gi|38565753|gb|CK085206.1|CK085206
EST:     GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAG                         GTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
EST: gi|88745084|gb|CI768444.1|CI768444
EST:     GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAG                         GTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
EST: gi|163920365|gb|EG711740.1|EG711740
EST:     GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAG                         GTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
EST: gi|117238030|gb|CT862028.1|CT862028
EST:     GAAGGAGCTCAAGGATCTGCAAAAGGATCCCCCTACATCATGCAGTGCAG                         GTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
EST: gi|58594014|gb|CF992322.1|CF992322
EST:     GAAGGAGCTCAAGGATCTGCAAAAGGATCCCCCTACATCATGCAGTGCAG                         GTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATNATGGGTCCAT
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
EST: gi|3759930|gb|C97188.1|C97188
EST:     GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAG                         GTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
EST: gi|58591111|gb|CF989419.1|CF989419
EST:     CTACATCATGCAGTGCAG                         GTCCTG-TGGTGAAGACATGTT-CACTGGCAGG-GAGGATAATGGGTCCAT
genomic: CTACATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
EST: gi|2310784|gb|C26939.1|C26939
EST:     GAAGGAGCTCAAGGNTCTGCAGAAGGNTCCCCCTACATCATGCAGTGCAG                         GTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
EST: gi|88377844|gb|CI637978.1|CI637978
EST:     GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAG                         GTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
EST: gi|88346503|gb|CI637349.1|CI637349
EST:     GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAG                         GTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
EST: gi|66913588|gb|CX100436.1|CX100436
EST:     GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAG                         GTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
EST: gi|88570585|gb|CI661958.1|CI661958
EST:     GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAG                         GTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
EST: gi|88730304|gb|CI753918.1|CI753918
EST:     GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAG                         GTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
EST: gi|58597143|gb|CK007671.1|CK007671
EST:     GAAGGAGCTCAAGGATCTGCAAAAGGATCCCCCTACATCATGCAGTGCAG                         GTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
EST: gi|88308997|gb|CI654419.1|CI654419
EST:     GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAG                         GTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATNATGGGTCCAT
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
EST: gi|88984239|gb|CI020156.1|CI020156
EST:     CATCATGCAGTGCAG                         GTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
genomic: CATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
EST: gi|163928906|gb|EG709759.1|EG709759
EST:     GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAG                         GTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
EST: gi|88762126|gb|CI771682.1|CI771682
EST:     GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAG                         GTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATNATGGGTCCAT
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
EST: gi|58594773|gb|CF993081.1|CF993081
EST:     GAAGGAGCTCAAGGATCTGCAAAAGGATCCCCCTACATCATGCAGTGCAG                         GTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
EST: gi|88718883|gb|CI742393.1|CI742393
EST:     GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAG                         GTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
EST: gi|86898750|gb|CI296063.1|CI296063
EST:     GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAG                         GTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
EST: gi|88730675|gb|CI754288.1|CI754288
EST:     GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAG                         GTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATNATGGGTCCAT
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
EST: gi|88294636|gb|CI602356.1|CI602356
EST:     GAAGGAGCTCAAGGATCTGCAGAAGGATCCCC-TACATCATGCAGTGCAG                         GTCCTGTTGGTGAAGAAATGTTCCAATGGCAGGCAACGATAATGGGTCCAT
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
EST: gi|86898783|gb|CI296080.1|CI296080
EST:     GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAG                         GTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
EST: gi|88692482|gb|CI736057.1|CI736057
EST:     GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAG                         GTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATNATGGGTCCAT
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
EST: gi|58603424|gb|CK013952.1|CK013952
EST:     GAAGGAGCTCAAGGATCTGCAAAAGGATCCCCCTACATCATGCAGTGCAG                         GTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAG
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCA-
EST: gi|55413329|gb|CV725705.1|CV725705
EST:     GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTGCATCATGCAGTGCAG                         GTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
EST: gi|87019040|gb|CI297348.1|CI297348
EST:     GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAG                         GTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATNATGGGTCCAT
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
EST: gi|3759748|gb|C97006.1|C97006
EST:     GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAG                         GTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
EST: gi|58591683|gb|CF989991.1|CF989991
EST:     GAAGGAGCTCAAGGATCTGCAAAAGGATCCCCCTACATCATGCAGTGCAG                         GTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
EST: gi|38472298|gb|CF956429.1|CF956429
EST:     GAAGGAGCTCAAGGATCTGCAAAAGGATCCCCCTACATCATGCAGTGCAG                         GTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
EST: gi|55408408|gb|CV720784.1|CV720784
EST:     GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAG                         GTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
EST: gi|58672051|gb|CK060737.1|CK060737
EST:     GAAGGAGCTCAAGGATCTGCAAAAGGATCCCCCTACATCATGCAGTGCAG                         GTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
EST: gi|58588732|gb|CF987040.1|CF987040
EST:     ATGCAGTGCAG                         GTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT
genomic: ATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 72 (upstream exon), 74 (downstream exon)
Score: 199

GAAGAGGAAAAGCAAGGGGGAATTGGGGATGGCGTCAAAGAGGATACAGAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGgtcttgcttt ... tatttgacagGTCCTGTTGGTGAAGACATGTTCCACTGGCAGGCAACGATAATGGGTCCATCTGATAGCCCATATGCTGGTGGAGTTTTCCTAGTTACCATCCACTTCCC




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAGAGGAAAAGCAAGGGGGAATTGGGGATGGCGTCAAAGAGGATACAGAAGGAGCTCAAGGATCTGCAGAAGGATCCCCCTACATCATGCAGTGCAGgtcttgctttctttcttttgcttgcttcttttgggcgtggattttgcagttctaggccatacatcttgcacaggagtcagatttttgtacatgtgcttct

- - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggcgtgg