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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGAGAGAGGCGTGCACGTGCGCGACACCGTGCACCTCGACATGGAGATGAACTGGTTCCGCGATCTGCTCGGCCTGCTCTGCCCAGACGATCTTGCCGgtatgttcgtctatttgttagacttaatcttgttatttactttagggtgaatagctaatatggtccctgaagtttctctttaggctcagtttagttcttg...

Basic information

species Oryza sativa
transcript LOC_Os01g46169.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86528613|gb|CI168819.1|CI168819
EST:     GAACTGGTTCCGCGATCTGCTCGGCCTGCTCTGCCCAGACGATCTTGCCG                         AGACCGAGGGAGCCACGGATCCGGGTGAAGGCCAAGACCCGCAAGACCTTG
genomic: GAACTGGTTCCGCGATCTGCTCGGCCTGCTCTGCCCAGACGATCTTGCCGgtatgttcgt ... ataattatagAGACCGAGGGAGCCACGGATCCGGGTGAAGGCCAAGACCCGCAAGACCTTG
EST: gi|88519058|gb|CI446712.1|CI446712
EST:     GAACTGGTTCCGCGATCTGCTCGGCCTGCTCTGCCCAGACGATCTTGCCG                         AGACCGAGGGAGCCACGGATCCGGGTGAAGGCCAAGACCCGCAAGACCTTG
genomic: GAACTGGTTCCGCGATCTGCTCGGCCTGCTCTGCCCAGACGATCTTGCCGgtatgttcgt ... ataattatagAGACCGAGGGAGCCACGGATCCGGGTGAAGGCCAAGACCCGCAAGACCTTG
EST: gi|88214455|gb|CI214304.1|CI214304
EST:     GAACTGGTTCCGCGATCTGCTCGGCCTGCTCTGCCCAGACGATCTTGCCG                         AGACCGAGGGAGCCACGGATCCGGGTGAAGGCCAAGACCCGCAAGACCTTG
genomic: GAACTGGTTCCGCGATCTGCTCGGCCTGCTCTGCCCAGACGATCTTGCCGgtatgttcgt ... ataattatagAGACCGAGGGAGCCACGGATCCGGGTGAAGGCCAAGACCCGCAAGACCTTG
EST: gi|88998009|gb|CI037894.1|CI037894
EST:     GAACTGGTTCCGCGATCTGCTCGGCCTGCTCTGCCCAGACGATCTTGCCG                         AGACCGAGGGAGCCACGGATCCGGGTGAAGGCCAAGACCCGCAAGACCTTG
genomic: GAACTGGTTCCGCGATCTGCTCGGCCTGCTCTGCCCAGACGATCTTGCCGgtatgttcgt ... ataattatagAGACCGAGGGAGCCACGGATCCGGGTGAAGGCCAAGACCCGCAAGACCTTG
EST: gi|88980104|gb|CI026394.1|CI026394
EST:     GAACTGGTTCCGCGATCTGCTCGGCCTGCTCTGCCCAGACGATCTTGCCG                         AGACCGAGGGAGCCACGGATCCGGGTGAAGGCCAAGACCCGCAAGACCTTG
genomic: GAACTGGTTCCGCGATCTGCTCGGCCTGCTCTGCCCAGACGATCTTGCCGgtatgttcgt ... ataattatagAGACCGAGGGAGCCACGGATCCGGGTGAAGGCCAAGACCCGCAAGACCTTG
EST: gi|88434939|gb|CI549136.1|CI549136
EST:     GAACTGGTTCCGCGATCTGCTCGGCCTGCTCTGCCCAGACGATCTTGCCG                         AGACCGAGGGAGCCACGGATCCGGGTGAAGGCCAAGACCCGCAAGACCTTG
genomic: GAACTGGTTCCGCGATCTGCTCGGCCTGCTCTGCCCAGACGATCTTGCCGgtatgttcgt ... ataattatagAGACCGAGGGAGCCACGGATCCGGGTGAAGGCCAAGACCCGCAAGACCTTG