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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGAGAGCAATTGAAAAGGCAAAAGCTGCTGCAGATGCAAAGGAGCGAATGGAAAGATTTAGATCCTCCTTCAAGGACAGTTTCAAGTCTACTAATCAGgtagttgatgtcattatattttttacactacagttccaaactaaatacttaaatatttgtctaagcatctagtaataatacctttaagtagtatctcatccatgttcttgatgcag

Basic information

species Oryza sativa
transcript LOC_Os01g44310.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g44310.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G316635_T03 (Zea mays), 5'ss of exon 2
GGAGAGAGCAATTGAAAAGGCAAAAGCTGCTGCAGATGCAAAGGAGCGAATGGAAAGATTTAGATCCTCCTTCAAGGACAGTTTCAAGTCTACTAATCAGgtagttgatgtcattatattttttacactacagttccaaactaaatacttaaatatttgtctaagcatctagtaataatacctttaagtagtatctcatccatgttcttgatgcag
|||||| |||||||||||||||||||||||||||||||||||||||||||| |  |  || || ||||| |||||||| ||||| ||| |  |||||||||||| ||||||||||||   |   |   |   ||| || ||  || |  |||| | |  ||||| |    | |  | | ||                                   
GGAGAGGGCAATTGAAAAGGCAAAAGCTGCTGCAGATGCAAAGGAGCGAATTGGGAAGTTCAGGTCCTCTTTCAAGGATAGTTTTAAGGCACCTAATCAGgtagctgatgtcattatgcatgc-atttttttgttgcatacacaaaa--taaacactgttctaatc-cgcattcttgacacag---------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33653814|gb|CF276428.1|CF276428
EST:     GAAAGATTTAGATCCTCCTTCAAGGACAGTTTCAAGTCTACTAATCAG                         GATAATCAACTGGACAAACAGTTTCAGAAGACAGCTTCTAATAACTATGAA
genomic: GAAAGATTTAGATCCTCCTTCAAGGACAGTTTCAAGTCTACTAATCAGgtagttgatg ... cttgatgcagGATAATCAACTGGACAAACAGTTTCAGAAGACAGCTTCTAATAACTATGAA