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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAGATTCATGAGCTGCTACTAAGCTTCGCAGAGGCTGGTGCCAATGTGGTGCGGTTGAAAGGCGGCGACCCTCTGgtaatacactgttcatgtaatgcaacttatctaggacctgggaatttggctgtgcacgctcgtgcaagcacaacatctgttgctattgtttatgcctttc...

Basic information

species Oryza sativa
transcript LOC_Os01g44050.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g44050.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G000739_T02 (Zea mays), 5'ss of exon 1
----------------------GAAGAGATTCATGAGCTGCTACTAAGCTTCGCAGAGGCTGGTGCCAATGTGGTGCGGTTGAAAGGCGGCGACCCTCTGgtaatacactgtt-catgtaatgcaacttatctaggacctgggaatttggctgtgcacgctcgtgcaa-gcacaacatctgttgctattgttt-atgcctttc--
                      || |||||||| |||||||| || ||||| || ||||||||||||||||| ||||| |||||||| ||||| |||||||||||   ||||| | || ||  | |||||    | ||    | |||    || ||||   | |      | |||  ||  |    |  ||   |    |||   
ATGACTGGTTGATGCAATGTAGGAGGAGATTCACGAGCTGCTGCTGAGCTTTGCGGAGGCTGGTGCCAATGTTGTGCGCTTGAAAGGTGGCGATCCTCTGgtaatttgctgttgcttgcaaaactactta----gtactaaaggattattgtg-gcacttccatttgttacccaagctcaatcaacaacgtcagacatttttttg

upper sequence: LOC_Os01g44050.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G105604_T02 (Zea mays), 5'ss of exon 2
GAAGAGATTCATGAGCTGCTACTAAGCTTCGCAGAGGCTGGTGCCAATGTGGTGCGGTTGAAAGGCGGCGACCCTCTGgtaatacactgtt-catgtaatgcaacttatctaggacctgggaatttggctgtgcacgctcgtgcaagcacaacatctgttgctattgtttatgcctttc
|| |||||||| |||||||| || ||||| || ||||| ||||||||||| ||||| |||||||| ||||| |||||||||||   || || | || ||  | ||||| | |     ||   |||| |      ||| | ||      |   ||         ||||  |   |   | 
GAGGAGATTCACGAGCTGCTGCTGAGCTTTGCGGAGGCCGGTGCCAATGTTGTGCGCTTGAAAGGTGGCGATCCTCTGgtaatttgctcttgcttgcaaatctacttaac-acctgatgattattttggcacttacgtttgttacccaatctcaaacaacaaaattggcttgacaaatt

upper sequence: LOC_Os01g44050.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G000739_T01 (Zea mays), 5'ss of exon 2
GAAGAGATTCATGAGCTGCTACTAAGCTTCGCAGAGGCTGGTGCCAATGTGGTGCGGTTGAAAGGCGGCGACCCTCTGgtaatacactgtt-catgtaatgcaacttatctaggacctgggaatttggctgtgcacgctcgtgcaa-gcacaacatctgttgctattgttt-atgcctttc--
|| |||||||| |||||||| || ||||| || ||||||||||||||||| ||||| |||||||| ||||| |||||||||||   ||||| | || ||  | |||||    | ||    | |||    || ||||   | |      | |||  ||  |    |  ||   |    |||   
GAGGAGATTCACGAGCTGCTGCTGAGCTTTGCGGAGGCTGGTGCCAATGTTGTGCGCTTGAAAGGTGGCGATCCTCTGgtaatttgctgttgcttgcaaaactactta----gtactaaaggattattgtg-gcacttccatttgttacccaagctcaatcaacaacgtcagacatttttttg