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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGTACGAGGTGCCGGTGGCGGACGGCGGCGTCTCCTCCGACCTGTGGGCGTGGCGCAAGTACGGCCAAAAGCCCATCAAGGGCTCGCCTTATCCACGgtaactaattattaccaacactttctttgaccctgccgtcccctttccacgcgtcactactcactagctactcctgcatatcaccataatcatagcgttg...

Basic information

species Oryza sativa
transcript LOC_Os01g43550.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g43550.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G105140_T01 (Zea mays), 5'ss of exon 2
TGGTGTACGAGGTGCCGGTGGCGGACGGCGGC--GTC-TCCTCCGACCTGTGGGCGTGGCGCAAGTACGGCCAAAAGCCCATCAAGGGCTCGCCTTATCCACGgtaactaattattaccaacactttctttgaccctgccgtcccctttccacgcgtcactactcactagctactcctgcatatcaccataatcatagcgttg--
   ||   ||| |||||| ||| |||||||||  ||| || || |||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||  | | |||    |||    ||       ||         |||      |||||  ||||||  |  |   |  |   ||  ||  | |||||  
---TGCGGGAGATGCCGGCGGCCGACGGCGGCTCGTCGTCGTCGGACCCGTGGGCGTGGCGCAAGTATGGCCAAAAGCCCATCAAGGGCTCGCCTTATCCGCGgtaactacctttgacctcgccttaacatgctttccacgcgttgcactcactgcctgctactagctagctggta-taggtggccttatcgtcg-aacgttgac

upper sequence: LOC_Os01g43550.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G149683_T01 (Zea mays), 5'ss of exon 2
TGGTGTACGAGGTGCCGGTGGCGGACGGCGGC--GTCTCCTCCG-ACCTGTGGGCGTGGCGCAAGTACGGCCAAAAGCCCATCAAGGGCTCGCCTTATCCACGgtaactaattattaccaacactttctttgaccctgccgtcccctttccacgcgtcactactcactagctactcctgcatatca-ccataat-catagcgttg--------------------------------------------------------------------------------------------------------
   ||  |||| |||||||||| |||||| ||  |||  | ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||              || ||||||||  ||| |||    | |  || |  ||| |   |||   ||     |  ||| ||| ||  ||   ||                                                                                                           
---TGCGCGAGATGCCGGTGGCCGACGGCAGCTCGTCGTCGCCGGACCCGTGGGCGTGGCGCAAGTATGGCCAAAAGCCCATCAAGGGCTCGCCTTATCCGCGgtaacta-----cgttgttttttactttgacctcgccttccatactgcgtgc-ttgctagt-gttaggagctttgataattcagccacaagacaattcgacagcagtagtgcgtgcttgcagtcgacattgtggccgctgaggcgctgacccgcagggctcaccgaactaataatgctccgttgcgattcgaatctgtgaccgcag