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AAATCCTATGAGACAAAGCAATATAAGAAGGGCCTGAAGGCAGCAGATTCCATTTTAAAGAAGTTCCCTGAGCATGGCGgtatgcagaaagatatatttaagttcctttcgtgttactttacttcctgcaatatatatgttagtcacattcacacattgtgtcttattcccctgtag
species | Oryza sativa |
transcript | LOC_Os01g43030.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTTTAAAGAAGTTCCCTGAGCATGGCG AAACCTTATCAATGAAAGGTTTGACGCTAAATTGCATGGATCGGAAATCTGEST: gi|88304950|gb|CI671208.1|CI671208
genomic: TTTTAAAGAAGTTCCCTGAGCATGGCGgtatgcagaa ... tcccctgtagAAACCTTATCAATGAAAGGTTTGACGCTAAATTGCATGGATCGGAAATCTG
EST: TTTTAAAGAAGTTCCCTGAGCATGGCG AAACCTTATCAATGAAAGGTTTGACGCTAAATTGCATGGATCGGAAATCTGEST: gi|88313578|gb|CI671703.1|CI671703
genomic: TTTTAAAGAAGTTCCCTGAGCATGGCGgtatgcagaa ... tcccctgtagAAACCTTATCAATGAAAGGTTTGACGCTAAATTGCATGGATCGGAAATCTG
EST: TTTTAAAGAAGTTCCCTGAGCATGGCG AAACCTTATCAATGAAAGGTTTGACGCTAAATTGCATGGATCGGAAATCTGEST: gi|88729096|gb|CI752606.1|CI752606
genomic: TTTTAAAGAAGTTCCCTGAGCATGGCGgtatgcagaa ... tcccctgtagAAACCTTATCAATGAAAGGTTTGACGCTAAATTGCATGGATCGGAAATCTG
EST: GGGCCTGAAGGCAGCAGATTCCATTTTAAAGAAGTCCCCTGAGCATGGCG AAACCTTATCAATGAAAGGGTTTGACGCTAAATTGCATGGATCGGAAATCTEST: gi|88728684|gb|CI752194.1|CI752194
genomic: GGGCCTGAAGGCAGCAGATTCCATTTTAAAGAAGTTCCCTGAGCATGGCGgtatgcagaa ... tcccctgtagAAACCTTATCAATGAAA-GGTTTGACGCTAAATTGCATGGATCGGAAATCT
EST: GGGCCTGAAGGCAGCAGATTCCATTTTAAAGAAGTTCCCTGAGCATGGCG AAACCTTATCAATGAAAGGTTTGACGCTAAATTGCATGGATCGGAAATCTGEST: gi|88369611|gb|CI582806.1|CI582806
genomic: GGGCCTGAAGGCAGCAGATTCCATTTTAAAGAAGTTCCCTGAGCATGGCGgtatgcagaa ... tcccctgtagAAACCTTATCAATGAAAGGTTTGACGCTAAATTGCATGGATCGGAAATCTG
EST: GGGCCTGAAGGCAGCAGATTCCATTTTAAAGAAGTTCCCTGAGCATGGCG AAACCTTATCAATGAAAGGTTTGACGCTAAATTGCATGGATCGGAAATCTGEST: gi|88577420|gb|CI674006.1|CI674006
genomic: GGGCCTGAAGGCAGCAGATTCCATTTTAAAGAAGTTCCCTGAGCATGGCGgtatgcagaa ... tcccctgtagAAACCTTATCAATGAAAGGTTTGACGCTAAATTGCATGGATCGGAAATCTG
EST: TTTTAAAGAAGTTCCCTGAGCATGGCG AAACCTTATCAATGAAAGGTTTGACGCTAAATTGCATGGATCGGAAATCTGEST: gi|88696007|gb|CI739582.1|CI739582
genomic: TTTTAAAGAAGTTCCCTGAGCATGGCGgtatgcagaa ... tcccctgtagAAACCTTATCAATGAAAGGTTTGACGCTAAATTGCATGGATCGGAAATCTG
EST: GGGCCTGAAGGCAGCAGATTCCATTTTAAAGAAGTTCCCTGAGCATGGCG AAACCTTATCAATGAAAGGTTTGACGCTAAATTGCATGGATCGGAAATCTGEST: gi|88587117|gb|CI704845.1|CI704845
genomic: GGGCCTGAAGGCAGCAGATTCCATTTTAAAGAAGTTCCCTGAGCATGGCGgtatgcagaa ... tcccctgtagAAACCTTATCAATGAAAGGTTTGACGCTAAATTGCATGGATCGGAAATCTG
EST: TTTTAAAGAAGTTCCCTGAGCATGGCG AAACCTTATCAATGAAAGGTTTGACGCTAAATTGCATGGATCGGAAATCTGEST: gi|58664912|gb|CK053598.1|CK053598
genomic: TTTTAAAGAAGTTCCCTGAGCATGGCGgtatgcagaa ... tcccctgtagAAACCTTATCAATGAAAGGTTTGACGCTAAATTGCATGGATCGGAAATCTG
EST: GGGCCTGAAGGCAGCAGATTCCATTTTAAAGAAGTTCCCTGAGCATGGCG AAACCTTATCAATGAAAGGTTTGACGCTAAATTGCATGGATCGGAAATCTGEST: gi|88393900|gb|CI684164.1|CI684164
genomic: GGGCCTGAAGGCAGCAGATTCCATTTTAAAGAAGTTCCCTGAGCATGGCGgtatgcagaa ... tcccctgtagAAACCTTATCAATGAAAGGTTTGACGCTAAATTGCATGGATCGGAAATCTG
EST: TTTTAAAGAAGTTCCCTGAGCATGGCG AANA-CTTATCAATGAAAGGTTTGACGCTAAATTGCATGGATCGGAAATCT
genomic: TTTTAAAGAAGTTCCCTGAGCATGGCGgtatgcagaa ... tcccctgtagAA-ACCTTATCAATGAAAGGTTTGACGCTAAATTGCATGGATCGGAAATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATCCTATGAGACAAAGCAATATAAGAAGGGCCTGAAGGCAGCAGATTCCATTTTAAAGAAGTTCCCTGAGCATGGCGgtatgcagaaagatatatttaagttcctttcgtgttactttacttcctgcaatatatatgttagtcacattcacacattgtgtcttattcccctgtag
- - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT