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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGCTACTGGAGGTTAAACACGGGTTGCTACAAGTCTCAGAGACACTAGACTTTCTTCATAACAATGCCCATCTTGCCCATCGAGCTATATCACCCGAGgttgaatgcagcacattcttcaactcatagtttctgcacgaatgtttcatgttatggatgtgctttgtcataaatctgttagaatcctttttcattttac...

Basic information

species Oryza sativa
transcript LOC_Os01g42950.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g42950.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G061681_T02 (Zea mays), 5'ss of exon 2
GGGGCTACTGGAGGTTAAACACGGGTTGCTACAAGTCTCAGAGACACTAGACTTTCTTCATAACAATGCCCATCTTGCCCATCGAGCTATATCACCCGAGgttga-atgcagcac-attcttcaac-tcatagttt-ctgcacgaatgtttcatgttatggatgtgctttgtcataaatctgttagaatcctttttcattttac
||| ||||| ||| ||||||| ||  ||||||||||  |||||||  |||| ||||||||||||||||| ||||||||||||||||||||||| || ||||||   ||||| | | |||||||  | | ||| ||| ||||  |    |||  |||||  ||| |  ||  |  |   ||||| |   |||| || || |    
GGGACTACTTGAGATTAAACATGGACTGCTACAAGTTGCAGAGACGTTAGATTTTCTTCATAACAATGCTCATCTTGCCCATCGAGCTATATCGCCTGAGgttagtatgcatcgccattcttctgccttataattttctgcttgttccttttctgttactgatataattgat--ttgctctgtcattttcctattacaatcc--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58653744|gb|CK042424.1|CK042424
EST:     CTTCATAACAATGCCCATCTTGCCCATCGAGCTATATCACCCGAG                         ACGGTCTTTATAACTTCGAATGGATCTTGGAAACTTGGTGGGTTTGGTTTT
genomic: CTTCATAACAATGCCCATCTTGCCCATCGAGCTATATCACCCGAGgttgaatgca ... tcttttgcagACGGTCTTTATAACTTTGAATGGATCTTGGAAACTTGGTGGGTTTGGTTTT
EST: gi|33678979|gb|CF307218.1|CF307218
EST:     ACTTTCTTCATAACAATGCCCATCTTGCCCATCGAGCTATATCACCCGAG                         ACGGTCTTTATAACTTTGAATGGATCTTGGAAACT
genomic: ACTTTCTTCATAACAATGCCCATCTTGCCCATCGAGCTATATCACCCGAGgttgaatgca ... tcttttgcagACGGTCTTTATAACTTTGAATGGATCTTGGAAACT