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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGAGCGCATACCATCTTTCATCATGGATTGGAACTGGCGGAAGGAAAAGTTAGTGTTCGAGTTTGGTTTGTGGTCTCCAGATATTTTATGTCTTCAGgtaatttataactgctgtactgcagtaattcagaagggttgtgctgctaagtcaatagttaaaaaagtggtaataccttcgtggagctagttatgttatc...

Basic information

species Oryza sativa
transcript LOC_Os01g42490.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g42490.3 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G034430_T01 (Zea mays), 5'ss of exon 3
TTATGAGCGCATACCATCTTTCATCATGGATTGGAACTGGCGGAAGGAAAAGTTAGTGTTCGAGTTTGGTTTGTGGTCTCCAGATATTTTATGTCTTCAGgtaatttataac-----tgctgtactgcagtaattcagaagggttgtgctgctaagtcaatagttaaaaaagtggtaataccttcgtggagctagttatgttatc
||||||    ||| || |||| ||  |||||||||||||||| ||||| |||||| |||| ||||| ||| ||||||||||||| ||| |||||||||||||| || | ||      ||   |||   | | ||       ||   |||||||   | |||  | ||| |        |        ||| | |  |||| |   
TTATGAAAAAATATCACCTTTTATTTTGGATTGGAACTGGCGCAAGGATAAGTTACTGTTTGAGTTCGGTCTGTGGTCTCCAGACATTCTATGTCTTCAGgtagttcacaagaagagtgtcataccatacttatcttagcaggacctgctgcttt-ttaattatgaaacataaaaagttgtgactacggatcca--tatgatg--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29637192|gb|CB642201.1|CB642201
EST:     AGTTAGTGTTCGAGTTTGGTTTGTGGTCTCCAGATATTTTATGTCTTCAG                         GAGGTTGACAAATTTACAGACCTTGAGCAAGAAATGGCAACTCGAGGATAT
genomic: AGTTAGTGTTCGAGTTTGGTTTGTGGTCTCCAGATATTTTATGTCTTCAGgtaatttata ... atgcctgtagGAGGTTGACAAATTTACAGACCTTGAGCAAGAAATGGCAACTCGAGGATAT