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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGAGATCTCGAAGACGGCCCTTATGTGGGCGTTGACGCACGTCGTGCAGCCCGGCGGCAGTATCTTGCTTCTCGTCGTCGTCCCGTCACATAGCTCTGgtattgtttcgttctcttgtgtttcctgcattgtgcagtttgtactctttttttttttggatttgtgttttgcacttggaatattgaatgcctttgcatg...

Basic information

species Oryza sativa
transcript LOC_Os01g41870.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g41870.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G480607_T06 (Zea mays), 5'ss of exon 1
AGGGAGATCTCGAAGACGGCCCTTATGTGGGCGTTGACGCACGTCGTGCAGCCCGGCGGCAGTATCTTGCTTCTCGTCGTCGTCCCGTCACATAGCTCTGgtattgtttc--gtt----ctcttgtgtttcctgcattgtgcagtt--tgtactctttttttttttggatttgtgttttgca---cttggaatattgaatgcctttgcatg---------------------------------------------
||||||||||| ||||||||| | || |||||| | ||||| ||||||||||| ||||| || ||| | ||||| |||||| ||||| |||| |||||||||||||||||  |||    || |  |||||  | |||   |   |    |    ||  | |  |    ||   || |||  |   | | |  |  | ||||  | |                                                  
AGGGAGATCTCCAAGACGGCCATCATCTGGGCGCTCACGCATGTCGTGCAGCCAGGCGGAAGCATCATACTTCTTGTCGTCATCCCGGCACACAGCTCTGgtattgtttctggttttagctttcctgtttggtacatcaggatatcaacgagtgctcatgtgctccaaatccatggtttttatcgcctagtgttgttaatgtttctctggttttgcagtagttgcctgaaagtatctgcacgcctctctatttcag

upper sequence: LOC_Os01g41870.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G057618_T02 (Zea mays), 5'ss of exon 2
AGGGAGATCTCGAAGACGGCCCTTATGTGGGCGTTGACGCACGTCGTGCAGCCCGGCGGCAGTATCTTGCTTCTCGTCGTCGTCCCGTCACATAGCTCTGgtattgtttcgttctcttgtgtttcctgcattgtgcagtttgt-actctttttttttttgga--tttgtgttttgcacttggaatattgaatgcctttgca-tg------------------------------------------------------------------------------
||||||||||| ||||| ||| | || |||||| | ||||| ||||||||||||||||| || ||| | || ||||||||| ||||| |||| |||||||||||||||||   || |||  |||||||  |  | | |    | | |   |  |  | || |  ||||  | |   |||    ||||  | |    || || ||                                                                              
AGGGAGATCTCCAAGACAGCCGTCATCTGGGCGCTCACGCATGTCGTGCAGCCCGGCGGAAGCATCATACTCCTCGTCGTCATCCCGGCACAGAGCTCTGgtattgtttc-cgcttttggctttcctgtttgcttctgggcatcaatgagtgctcatgtgcacgtttgcttgtactactaatcatatccactttagttacaatgatcacgtaattctgtcaatgtttctctccggttttccagtagttgcctgaaaaatatgtgcacgcttcaccatttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|112785737|gb|EE591308.1|EE591308
EST:     CTCGTTGTCGTCCCGTCACATAGCTCTG                         GCAGGAAGTTCTGGGGCTTTCCACTCTTTGCTGGTGATTGCGCAAGTGGCA
genomic: CTCGTCGTCGTCCCGTCACATAGCTCTGgtattgtttc ... tgtatttcagGCAGGAAGTTCTGGGGCTTTCCACTCTTTGCTGGTGATTGCGCAAGTGGCA