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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGTTTTGCCAGCTGGAGTAAGGATATACTCTTCTGGGTTGGATGCAAATGATTTCTCAACCTATCCACGGAGTTATCCCATAGTTTTGACAGgtgcatgcaacggttgttcagattgatgatcctgtcgaaggcttgaagctgatatttcctaaaccttttgagactgtttcattcttctagttaaaactgttattggttactgtatatagattgctcccttacctttgttctcacttcttgtag

Basic information

species Oryza sativa
transcript LOC_Os01g39380.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g39380.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G074572_T01 (Zea mays), 5'ss of exon 2
TGTGTTTTGCCAGCTGGAGTAAGGATATACTCTTCTGGGTTGGATGCAAATGATTTCTCAACCTATCCACGGAGTTATCCCATAGTTTTGACAGgtgcatgcaacggttgttcagattgatgatcctgtcgaaggcttgaagctgatatttcctaaaccttttgagactgtttcattcttctagttaaaactgttattggttactgtatatagattgctcccttacctttgttctcacttcttgtag
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TGTGTTTTGCCAGCGGGAGTAAGAATATATTCTTCAGGGCTGGACACAGATGATGTCTCAACTTATCCACGTAGTTATCCTATAGTTTTAACAGgtacatgccatagacattcagatctataggtctg------gttgaaaaataatattttgtataa-----------attcgaaccttatggtcaaaactgctattgcttgctgtatac------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|25803848|gb|CA759809.1|CA759809
EST:     TGCAAATGATTTCTCAACCTATCCACGGAGTTATCCCATAGTTTTGACAG                         AGGGAGATGGCTCAAAAATTTATGTTAGTTGTATTGCATTTCGGGATCCAA
genomic: TGCAAATGATTTCTCAACCTATCCACGGAGTTATCCCATAGTTTTGACAGgtgcatgcaa ... cttcttgtagAGGGAGATGGCTCAAAAATTTATGTTAGTTGTATTGCATTTCGGGATCCAA
EST: gi|58688976|gb|CK077663.1|CK077663
EST:     CAAATGATTTCTCAACCTATCCACGNGAGTTATCCCNATAGTTTTGACAG                         AGGGAGATGGCTCAAAAATTTATGTTAGTTGTATTGCATTTCGGGATCCAA
genomic: CAAATGATTTCTCAACCTATCCACG-GAGTTATCCC-ATAGTTTTGACAGgtgcatgcaa ... cttcttgtagAGGGAGATGGCTCAAAAATTTATGTTAGTTGTATTGCATTTCGGGATCCAA