1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGAGGCGCAACCGCAGCTGAACTAATGTACGCCGTTCCTGGAGCCTCCAAGTGCTCCAAACCCGAGGATGATGATGCCGTATACTGCGTCGAGGCCCAAGgtaacaacatattggtgatatgttaacatactcattccatactcgtattagaagtcgtttaggacaatatttaagtcaaaccttagaaatataaatcttg...
species | Oryza sativa |
transcript | LOC_Os01g38359.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTGCTCCAAACCCGAGGATGATGATGCCGTATACTGCGTCGAGGCCCAAG TTCACTTCATTGGAGAACAACTTGACGGTACCGAGTTCGTTTCAACCCGAGEST: gi|88312265|gb|CI582603.1|CI582603
genomic: GTGCTCCAAACCCGAGGATGATGATGCCGTATACTGCGTCGAGGCCCAAGgtaacaacat ... tcccgtgcagTTCACTTCATTGGAGAACAACTTGACGGTACCGAGTTCGTTTCAACCCGAG
EST: GTGCTCCAAACCCGAGGATGATGATGCCGTATACTGGGTCGAGGCCCAAG TTCACTTCATTGGAGAACAACTTGACGGTACCGAGTTCGTTTCAACCCGAGEST: gi|8859057|gb|AU096375.1|AU096375
genomic: GTGCTCCAAACCCGAGGATGATGATGCCGTATACTGCGTCGAGGCCCAAGgtaacaacat ... tcccgtgcagTTCACTTCATTGGAGAACAACTTGACGGTACCGAGTTCGTTTCAACCCGAG
EST: GTGCTCCAAACCCGAGGATGATGATGCCGTATACTGCGTCGAGGCCCAAG NTCACTTCATTNGAGAACAACTTTACGGTACCGAGTTCGTTT
genomic: GTGCTCCAAACCCGAGGATGATGATGCCGTATACTGCGTCGAGGCCCAAGgtaacaacat ... tcccgtgcagTTCACTTCATTGGAGAACAACTTGACGGTACCGAGTTCGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGGCGCAACCGCAGCTGAACTAATGTACGCCGTTCCTGGAGCCTCCAAGTGCTCCAAACCCGAGGATGATGATGCCGTATACTGCGTCGAGGCCCAAGgtaacaacatattggtgatatgttaacatactcattccatactcgtattagaagtcgtttaggacaatatttaagtcaaaccttagaaatataaatcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG