1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
CACCAGCCAGCCGCCTGTTGTCTTTAAGACCCAGCTATACACTCTGACTGGTGTACCACCTGAAAGGCAAAAAATTATGGTGAAGGGTGGAATATTGAAGgtaatacatgctcacgtgcttatggacacaactgattttcatgtacttctatatttaatctttctttgtaacaacgtggtcaattttctgtatttgtaatgcag
species | Oryza sativa |
transcript | LOC_Os01g36930.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTGTACCACCTGAAAGGCAAAAAATTATGGTGAAGGGTGGAATATTGAAG GATGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|426644|gb|D22465.1|D22465
genomic: GTGTACCACCTGAAAGGCAAAAAATTATGGTGAAGGGTGGAATATTGAAGgtaatacatg ... tgtaatgcagGATGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTACCACCTGAAAGGCAAAAAATTATGGTGAAGGGTGGAATATTGAAG GATGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|11025723|gb|AU162324.1|AU162324
genomic: GTGTACCACCTGAAAGGCAAAAAATTATGGTGAAGGGTGGAATATTGAAGgtaatacatg ... tgtaatgcagGATGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGAAGGGTGGAATATTGAAG GATGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|29646291|gb|CB651298.1|CB651298
genomic: GTGAAGGGTGGAATATTGAAGgtaatacatg ... tgtaatgcagGATGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTACCACCTGAAAGGCAAAAAATTATGGTGAAGGGTGGAATATTGAAG GATGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|29689095|gb|CB685370.1|CB685370
genomic: GTGTACCACCTGAAAGGCAAAAAATTATGGTGAAGGGTGGAATATTGAAGgtaatacatg ... tgtaatgcagGATGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTACCACCTGAAAGGCAAAAAATTATGGTGAAGGGTGGAATATTGAAG GATGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|88315540|gb|CI615412.1|CI615412
genomic: GTGTACCACCTGAAAGGCAAAAAATTATGGTGAAGGGTGGAATATTGAAGgtaatacatg ... tgtaatgcagGATGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTACCACCTGAAAGGCAAAAAATTATGGTGAAGGGTGGAATATTGAAG GATGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|58681280|gb|CK069967.1|CK069967
genomic: GTGTACCACCTGAAAGGCAAAAAATTATGGTGAAGGGTGGAATATTGAAGgtaatacatg ... tgtaatgcagGATGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTACCACCTGAAAGGCAAAAAATTATGGTGAAGGGTGGAATATTGAAG GATGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|33795963|gb|CF323849.1|CF323849
genomic: GTGTACCACCTGAAAGGCAAAAAATTATGGTGAAGGGTGGAATATTGAAGgtaatacatg ... tgtaatgcagGATGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTACCACCTGAAAGGCAAAAAATTATGGTGAAGGGTGGAATATTGAAG GATGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|88726053|gb|CI749708.1|CI749708
genomic: GTGTACCACCTGAAAGGCAAAAAATTATGGTGAAGGGTGGAATATTGAAGgtaatacatg ... tgtaatgcagGATGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTACCACCTGAAAGGCAAAAAATTATGGTGAAGGGTGGAATATTGAAG GATGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|29679500|gb|CB675775.1|CB675775
genomic: GTGTACCACCTGAAAGGCAAAAAATTATGGTGAAGGGTGGAATATTGAAGgtaatacatg ... tgtaatgcagGATGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTACCACCTGAAAGGCAAAAAATTATGGTGAAGGGTGGAATATTGAAG GATGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|29615418|gb|CB620430.1|CB620430
genomic: GTGTACCACCTGAAAGGCAAAAAATTATGGTGAAGGGTGGAATATTGAAGgtaatacatg ... tgtaatgcagGATGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTACCACCTGAAAGGCAAAAAATTATGGTGAAGGGTGGAATATTGAAG GATGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|29674105|gb|CB670380.1|CB670380
genomic: GTGTACCACCTGAAAGGCAAAAAATTATGGTGAAGGGTGGAATATTGAAGgtaatacatg ... tgtaatgcagGATGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTACCACCTGAAAGGCAAAAAATTATGGTGAAGGGTGGAATATTGAAG GATGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|88351105|gb|CI623327.1|CI623327
genomic: GTGTACCACCTGAAAGGCAAAAAATTATGGTGAAGGGTGGAATATTGAAGgtaatacatg ... tgtaatgcagGATGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTACCACCTGAAAGGCAAAAAATTATGGTGAAGGGTGGAATATTGAAG GATGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|88357489|gb|CI623543.1|CI623543
genomic: GTGTACCACCTGAAAGGCAAAAAATTATGGTGAAGGGTGGAATATTGAAGgtaatacatg ... tgtaatgcagGATGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTACCACCTGAAAGGCAAAAAATTATGGTGAAGGGTGGAATATTGAAG GATGATGCAGATTGGTCTACTTTGGGAGTGAAAGATEST: gi|29615343|gb|CB620355.1|CB620355
genomic: GTGTACCACCTGAAAGGCAAAAAATTATGGTGAAGGGTGGAATATTGAAGgtaatacatg ... tgtaatgcagGATGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
EST: GTGTACCACCTGAAAGGCAAAAAATTATGGTGAAGGGTGGAATATTGAAG GATGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
genomic: GTGTACCACCTGAAAGGCAAAAAATTATGGTGAAGGGTGGAATATTGAAGgtaatacatg ... tgtaatgcagGATGATGCAGATTGGTCTACTTTGGGAGTGAAAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACCAGCCAGCCGCCTGTTGTCTTTAAGACCCAGCTATACACTCTGACTGGTGTACCACCTGAAAGGCAAAAAATTATGGTGAAGGGTGGAATATTGAAGgtaatacatgctcacgtgcttatggacacaactgattttcatgtacttctatatttaatctttctttgtaacaacgtggtcaattttctgtatttgtaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG