Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGCGGAACCGACTTCGGATTAATCCCAGGTTCCTGCACTCGAATGCTACTTCCCACAAGTGGGCTTTTGGTGgtatgagaattgacaaatcttattagtggaaacaactccattttaggcaatgacttgattctaatacctttaattcgttcattcgttcgcataattgcaa...

Basic information

species Oryza sativa
transcript LOC_Os01g36840.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g36840.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G030596_T02 (Zea mays), 5'ss of exon 2
GTGGGCGGAACCGACTTCGGATTAATCCCAGGTTCCTGCACTCGAATGCTACTTCCCACAAGTGGGCTTTTGGTGgtatgaga--attgacaaatcttattag---tggaaacaactccattttaggcaatgacttgattctaatacctttaattcgttcattcgttcgcataattgcaa
|||||||||||||  | ||||| || |||| ||| |||||||| ||||| ||||||||||||||||||||||| |||||| ||  ||   |  ||  | |  |   |  ||    ||  | |      ||  |||   || ||  |  | |  |   |||||| |   | ||||      
GTGGGCGGAACCGGTTGCGGATAAACCCCAAGTTTCTGCACTCCAATGCGACTTCCCACAAGTGGGCTTTTGGCGgtatgggacgatcccctcattgtctcgggtgtataattggctatactacgcaaaacaactgttttttaggaattgttttggcttcattagcatgaataag-----

upper sequence: LOC_Os01g36840.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA04G35870.1 (Glycine max), 5'ss of exon 3
GTGGGCGGAACCGACTTCGGATTAATCCCAGGTTCCTGCACTCGAATGCTACTTCCCACAAGTGGGCTTTTGGTGgtatg-----agaattgacaaatcttattagtggaaacaactccattttaggcaatgacttgattctaatacctttaattcgttcattcgttcgcataattgcaa-------
 ||     ||    || |   |  | |||| |||||| ||||| ||||| ||||| || |||||||| ||||||||||||     |  ||    | |   |        |   |   | | ||||    |  || |  || | |||  |||   |       || ||  | |  || |         
ATGCCAAAAATTATCTACATGTGCACCCCATGTTCCTTCACTCAAATGCAACTTCGCATAAGTGGGCATTTGGTGgtatgttcttaccatctgtataaacttgcgtcttatttatgactactttaattgaccacct--ttgtgatattttttcatgagctgatctttttctttgtttctgtttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58689030|gb|CK077717.1|CK077717
EST:     TCCCAGGTTCCTGCACTCGAATGCTACTTCCCACAAGTGGGCTTTTGGTG                         CCATTGCCGAGCTTCTTGATAATGCAATTGACGAG
genomic: TCCCAGGTTCCTGCACTCGAATGCTACTTCCCACAAGTGGGCTTTTGGTGgtatgagaat ... attttttcagCCATTGCCGAGCTTCTTGATAATGCAATTGACGAG