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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCAAGTTCAACACGAGTTGCTGCTGATCCTGATACACATCAAGATTTCCAGCCTACAACCAAAAGTTCCAACATGTCTTTTGATGACATTGTTTCTCAGgtattaacatttctaaatgagctttttggacatttaaattgaagaacttattttgtggcaaagctaggcatgtcttaaagtttcatgatgtatttctgccatttgttaatgctgcctcataattgttgggcag

Basic information

species Oryza sativa
transcript LOC_Os01g34620.8
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g34620.9 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM5G880300_T02 (Zea mays), 5'ss of exon 3
CTCAAGTTCAACACGAGTTGCTGCTGATCCTGATACACATCAAGATTTCCAGCCTACAACCAAAAGTTCCAACATGTCTTTTGATGACATTGTTTCTCAGgtattaacatttctaaatgagctttttggacatttaaatt-------gaagaacttattttgtggcaaagctaggcatgtcttaaagtttcatgatgtatttctgccatttgttaatgctgcctcataattgttgggcag
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CTCAACTACAACACGAATAGCTGCTGATCCTGATACACATCAAGATTTCGAGCCAAAGAGCAGAATTTCAGACATGACTTTGCATGACGCTATTGCTCAGgtatttacatgcagagatgagattcaagaatatttatattaaacattgaagcacctaacttgtgataaaactaggcataacctgaagcttattgatgtatcttt-ttagctgccatctcttcttatcattttcttggtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58675402|gb|CK064089.1|CK064089
EST:     AGCCTACAACCAAAAGTTCCAACATGTCTTTTGATGACATTGTTTCTCAG                         GATATCAAGGAGAACCCAGTCCTGATCTACATGAAGGGTTATCCTGATGCT
genomic: AGCCTACAACCAAAAGTTCCAACATGTCTTTTGATGACATTGTTTCTCAGgtattaacat ... tgttgggcagGATATCAAGGAGAACCCAGTCCTGATCTACATGAAGGGTTATCCTGATGCT