Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATCTGCTGGAAGAGGGCTCTTTCGATGCTGCGGTCAATGGTTGTGATTGTGTTTTCCATACGGCTTCTCCCTTTTACCACAATGTTAAAGATCCTAAGgtgagcactatagctgtttgatgcaaaatcataattgctgtatgttactgtaatagattgatctggacatataaaaacgatcctgatgtcacttattttt...

Basic information

species Oryza sativa
transcript LOC_Os01g34480.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g34480.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G179981_T01 (Zea mays), 5'ss of exon 2
AAATCTGCTGGAAGAGGGCTCTTTCGATGCTGCGGTCAATGGTTGTGATTGTGTTTTCCATACGGCTTCTCCCTTTTACCACAATGTTAAAGATCCTAAGgtgagcactatagctgtttgatgcaaaatcataattgctgtatgttactgtaatagattgatctggacatataaaaacgatcctgatgtcacttattttt-
 |  ||||| |||||||| |||||||||||||| ||  |||| || ||   ||| || ||||| || ||||||||||| |||||||| || ||| |||||||  |    ||      || |||  |||  | | || | || || | ||  | |      |  |  |||  |   | |       | ||   |  | |   
TAGCCTGCTAGAAGAGGGTTCTTTCGATGCTGCAGTTCATGGATGCGACACTGTATTTCATACTGCCTCTCCCTTTTATCACAATGTCAAGGATGCTAAGgtttgtttaatgaaaacttcatg-gaaagaagagttcccgtctgctgctagatttatcatacatttacaatttttatcagcttcaaggtgcatggtgtcga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29640618|gb|CB645627.1|CB645627
EST:     GTGTTTTCCATACGGCTTCTCCCTTTTACCACAATGTTAAAGATCCTAAG                         GCTGAGTTACTTGACCCTGCAGTCAAAGGAACCCTTAATGTTCTAGGCTCC
genomic: GTGTTTTCCATACGGCTTCTCCCTTTTACCACAATGTTAAAGATCCTAAGgtgagcacta ... aaaaaaacagGCTGAGTTACTTGACCCTGCAGTCAAAGGAACCCTTAATGTTCTAGGCTCC
EST: gi|29616459|gb|CB621471.1|CB621471
EST:     GTGTTTTCCATACGGCTTCTCCCTTTTACCACAATGTTAAAGATCCTAAG                         GCTGAGTTACTTGACCCTGCAGTCAAAGGAACCCTTAATGTTCTAGGCTCC
genomic: GTGTTTTCCATACGGCTTCTCCCTTTTACCACAATGTTAAAGATCCTAAGgtgagcacta ... aaaaaaacagGCTGAGTTACTTGACCCTGCAGTCAAAGGAACCCTTAATGTTCTAGGCTCC
EST: gi|117221000|gb|CT845506.1|CT845506
EST:     GTGTTTTCCATACGGCTTCTCCCTTTTACCACAATGTTAAAGATCCTAAG                         GCTGAGTTACTTGACCCTGCAGTCAAAGGAACCCTTAATGTTCTAGGCTCC
genomic: GTGTTTTCCATACGGCTTCTCCCTTTTACCACAATGTTAAAGATCCTAAGgtgagcacta ... aaaaaaacagGCTGAGTTACTTGACCCTGCAGTCAAAGGAACCCTTAATGTTCTAGGCTCC
EST: gi|11026105|gb|AU162706.1|AU162706
EST:     GTGTTTTCCATACGGCTTCTCCCTTTTACCACAATGTTAAAGATCCTAAG                         GCTGAGTTACTTGACCCTGCAGTCAAAGGAACCCTTAATGTTCTAGGCTCC
genomic: GTGTTTTCCATACGGCTTCTCCCTTTTACCACAATGTTAAAGATCCTAAGgtgagcacta ... aaaaaaacagGCTGAGTTACTTGACCCTGCAGTCAAAGGAACCCTTAATGTTCTAGGCTCC
EST: gi|58610521|gb|CK038233.1|CK038233
EST:     GTGTTTTCCATACGGCTTCTCCCTTTTACCACAATGTTAAAGATCCTAAG                         GCTGAGTTACTTGACCCTGCAGTCAAAGGAACCCTTAATGTTCTAGGCTCC
genomic: GTGTTTTCCATACGGCTTCTCCCTTTTACCACAATGTTAAAGATCCTAAGgtgagcacta ... aaaaaaacagGCTGAGTTACTTGACCCTGCAGTCAAAGGAACCCTTAATGTTCTAGGCTCC
EST: gi|84117052|gb|CD150819.1|CD150819
EST:     GTGTTTTCCATACGGCTTCTCCCTTTTACCACAATGTTAAAGATCCTAAG                         GCTGAGTTACTTGACCCCGCAGTCAAAGGAACCCTTAATGTTCTAGGCTCC
genomic: GTGTTTTCCATACGGCTTCTCCCTTTTACCACAATGTTAAAGATCCTAAGgtgagcacta ... aaaaaaacagGCTGAGTTACTTGACCCTGCAGTCAAAGGAACCCTTAATGTTCTAGGCTCC