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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGCTGCCAGTGGTGGTGTCGCTGCCGGACTATTGTCCTGTTGTCTTCTTCGACCAGGGCTGGGAATGCACGAACTGACCATCAGCAACACTGAGTTAGgtgtggatggtttagttcctatttgtcaatactgatttctcacaagatacaatttctgatttttctctatgcgctggggatgatggccatgtagcttccagaagcttttattctttcctggttgatgtggttgtcacccttgtctattgcag

Basic information

species Oryza sativa
transcript LOC_Os01g29804.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88482981|gb|CI420252.1|CI420252
EST:     TCGACCAGGGCTGGGAATGCACGAACTGACCATCAGCAACACTGAGTTAG                         ACCACCTGTTCGATGGAATGCAACAGAAAGAGGACACTTTCAGCCAGATTG
genomic: TCGACCAGGGCTGGGAATGCACGAACTGACCATCAGCAACACTGAGTTAGgtgtggatgg ... tctattgcagACCACCTGTTCGATGGAATGCAACAGAAAGAGGACACTTTCAGCCAGATTG
EST: gi|89172889|gb|CI040782.1|CI040782
EST:     TCGACCAGGGCTGGGAATGCACGAACTGACCATCAGCAACACTGAGTTAG                         ACCACCTGTTCGATGGAATGCAACAGAAAGAGGACACTTTCAGCCAGATTG
genomic: TCGACCAGGGCTGGGAATGCACGAACTGACCATCAGCAACACTGAGTTAGgtgtggatgg ... tctattgcagACCACCTGTTCGATGGAATGCAACAGAAAGAGGACACTTTCAGCCAGATTG
EST: gi|88517650|gb|CI445304.1|CI445304
EST:     TCGACCAGGGCTGGGAATGCACGAACTGACCATCAGCAACACTGAGTTAG                         ACCACCTGTTCGATGGAATGCAACAGAAAGGAGGACACTTTCAGCCAGATT
genomic: TCGACCAGGGCTGGGAATGCACGAACTGACCATCAGCAACACTGAGTTAGgtgtggatgg ... tctattgcagACCACCTGTTCGATGGAATGCAACAGAAAG-AGGACACTTTCAGCCAGATT
EST: gi|88521752|gb|CI448419.1|CI448419
EST:     TCGACCAGGGCTGGGAATGCACGAACTGACCATCAGCAACACTGAGTTAG                         ACCACCTGTTCGATGGAATGCAACAGAAAGAGGACACTTTCAGCCAGATTG
genomic: TCGACCAGGGCTGGGAATGCACGAACTGACCATCAGCAACACTGAGTTAGgtgtggatgg ... tctattgcagACCACCTGTTCGATGGAATGCAACAGAAAGAGGACACTTTCAGCCAGATTG