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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACCTTTGGACCAACATTCCGTGCAGAAAACTCCCATACATCACGACATTTGGCAGAGTTTTGGATGGTTGAACCAGAAATCGCATTTGCTAACTTGCAGgtaaataatccagatcatattttcctttgcagcatttgaaatatttcatcttagcttattaatctatctactattggttctaagattctgtatgaattgttatttcatgatattttggcgaactgtgttccag

Basic information

species Oryza sativa
transcript LOC_Os01g27520.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g27520.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G083836_T01 (Zea mays), 5'ss of exon 2
TACCTTTGGACCAACATTCCGTGCAGAAAACTCCCATACATCACGACATTTGGCAGAGTTTTGGATGGTTGAACCAGAAATCGCATTTGCTAACTTGCAGgtaaataatccagatcatattttcctttg-cagcatttgaaatatttcatcttagcttattaatctatctactattggttctaagattctgtatgaattgttatttca-tgatattttggcgaactgtgttccag
||||||||||||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||| |   |||  ||||  |||     ||| ||||| |  ||   ||  |  ||  ||     | |||||        | | |  |||  ||  ||  ||  | ||||| | ||   ||||||  | |||
TACCTTTGGACCAACATTCCGGGCAGAGAACTCACATACGTCACGACATTTGGCAGAGTTTTGGATGGTTGAACCGGAAATCGCATTTGCAAACTTGCAGgtaactaagctgaatcgaatttgtcttcaattgcagttgaattgattttcctcgg--tacaaaatatccgactat-------gaaagttagtaaaaacagtctttgaagtgatagtatgtttaactgttctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163920588|gb|EG709595.1|EG709595
EST:     TGGCAGAGTTTTGGATGGTTGAACCAGAAATCGCATTTGCTAACTTGCAG                         GATGATATGAACTGTGCAGAAAGATATGTACAGTACCTTTGCAAGTGGCTT
genomic: TGGCAGAGTTTTGGATGGTTGAACCAGAAATCGCATTTGCTAACTTGCAGgtaaataatc ... tgtgttccagGATGATATGAACTGTGCAGAAAGATATGTACAGTACCTTTGCAAGTGGCTT
EST: gi|163927289|gb|EG715208.1|EG715208
EST:     TGGCAGAGTTTTGGATGGTTGAACCAGAAATCGCATTTGCTAACTTGCAG                         GATGATATGAACTGTGCAGAAAGATATGTACAGTACCTTTGCAAGTGGCTT
genomic: TGGCAGAGTTTTGGATGGTTGAACCAGAAATCGCATTTGCTAACTTGCAGgtaaataatc ... tgtgttccagGATGATATGAACTGTGCAGAAAGATATGTACAGTACCTTTGCAAGTGGCTT
EST: gi|163926765|gb|EG715053.1|EG715053
EST:     TGGCAGAGTTTTGGATGGTTGAACCAGAAATCGCATTTGCTAACTTGCAG                         GATGATATGAACTGTGCAGAAAGATATGTACAGTACCTTTGCAAGTGGCTT
genomic: TGGCAGAGTTTTGGATGGTTGAACCAGAAATCGCATTTGCTAACTTGCAGgtaaataatc ... tgtgttccagGATGATATGAACTGTGCAGAAAGATATGTACAGTACCTTTGCAAGTGGCTT
EST: gi|58679918|gb|CK068605.1|CK068605
EST:     TGGCAGAGTTTTGGATGGTTGAACCAGAAATCGCATTTGCTAACTTGCAG                         GATGATATGAACTGTGCAGAAAGATATGTACAGTACCTTTGCAAGTGGCTT
genomic: TGGCAGAGTTTTGGATGGTTGAACCAGAAATCGCATTTGCTAACTTGCAGgtaaataatc ... tgtgttccagGATGATATGAACTGTGCAGAAAGATATGTACAGTACCTTTGCAAGTGGCTT
EST: gi|58589280|gb|CF987588.1|CF987588
EST:     TGGCAGAGTTTTGGATGGTTGAACCAGAAATCGCATTTGCTAACTTGCAG                         GATGATATGAACTGTGCAGAAAGATATGTACAGTACCTTTGCAAGTGGCTT
genomic: TGGCAGAGTTTTGGATGGTTGAACCAGAAATCGCATTTGCTAACTTGCAGgtaaataatc ... tgtgttccagGATGATATGAACTGTGCAGAAAGATATGTACAGTACCTTTGCAAGTGGCTT
EST: gi|66917235|gb|CX104083.1|CX104083
EST:     TGGCAGAGTTTTGGATGGTTGAACCAGAAATCGCATTTGCTAACTTGCAG                         GATGATATGAACTGTGCAGAAAGATATGTACAGTACCTTTGCAAGTGGCTT
genomic: TGGCAGAGTTTTGGATGGTTGAACCAGAAATCGCATTTGCTAACTTGCAGgtaaataatc ... tgtgttccagGATGATATGAACTGTGCAGAAAGATATGTACAGTACCTTTGCAAGTGGCTT
EST: gi|29614514|gb|CB619527.1|CB619527
EST:     TGGCAGAGTTTTGGATGGTTGANCCAGAAATCGCATTTGCTAACTTGCAG                         GATGATATGAACTGTGCAGAAAGATATGTACAGTACCTTTGCAAGTGGCTT
genomic: TGGCAGAGTTTTGGATGGTTGAACCAGAAATCGCATTTGCTAACTTGCAGgtaaataatc ... tgtgttccagGATGATATGAACTGTGCAGAAAGATATGTACAGTACCTTTGCAAGTGGCTT