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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttactgatttcctgtgatgtgcttgaaatggcctctgccatttgcgactattttctgttgttcagtaatgtaattcgccgaactgctttgtgtgccttccag

Basic information

species Oryza sativa
transcript LOC_Os01g25610.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g25610.1 (Oryza sativa), 5'ss of exon 2
lower sequence: EDP04951 (Chlamydomonas reinhardtii), 5'ss of exon 1
----------------------GCGAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttactgatttcctgtgatgtgcttgaaatggcctctgccatttgcgactattttctgttgttcagtaatgtaattcgccgaactgctttgtgtgccttccag---------------------------------------------------------------
                      | | | ||    |||||||| |||||| | |||||||||||| | ||||||||||| ||||||||  ||||    || || ||| ||    |||  || ||||     | |  |     || |   ||||      ||| |  | || ||     |   || ||    ||   |  |||||  | |                                                               
CCTAGAGGCTCAACTCAAGATGGTGCGCGGCCCTAAGAAGCACCTCAAGCGCCTCAATGCGCCCTACCACTGGATGCTGGACAAGCTGAGCGGCATCTTCgtaagtcta----ttttatg-gatgctggagcagggcttgttggcggctgcggaggaattcgggcgctcggtctctcagggcggcgg-tcgcagggcatgcctcgccgttccgtgctcttggttgctttcgggtcatcatcgctcatgagtttcattatttgattgtgcag

upper sequence: LOC_Os01g25610.1 (Oryza sativa), 5'ss of exon 2
lower sequence: PP1S2_16V6.1 (Physcomitrella patens), 5'ss of exon 2
GCGAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttactgatttcctgtgatgtgcttgaaatggcctctgccatttgcgactattttctgttgttcagtaatgtaattcgccgaactgctttgtgtgccttccag
||  | || |||||||||||| | ||||||||||||||||||| |||||||||||| |||||| | || || || ||||| |||||      || || |  | | ||  |  |  |    | |||    |      ||    ||   |     |  |||||     | |  |   | |  ||    
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTTgtaagttttacatcttgcttt--tatactcaacgtt-caatcgtcatgctagtacgcatttctctgactatctcagggattcgaatgtcagtctca-gcgaatt----

upper sequence: LOC_Os01g25610.1 (Oryza sativa), 5'ss of exon 2
lower sequence: PP1S81_172V6.1 (Physcomitrella patens), 5'ss of exon 2
GCGAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttactgatttcctgtgatgtgcttgaaatggcctctgccatttgcgactattttctgttgttcagtaatgtaattcgccgaactgctttgtgtgccttccag--
||  | || |||||||||||| | ||||||||||||||||||||||| ||||||||||||||  | || || || ||||||||||      ||| || |||    | |||| |||  | |     ||     |  | | |  |    |   |     |||   || ||||    |  |  ||| |   
GCTCGTGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAATTGGGTGGCGCCTTTgtgagttct----tttactttga----cctgaattggtgtttctggcttc--gttgatctgtaataggaacgcacagggttcctggagctgcccccttagttttcgaagt

upper sequence: LOC_Os01g25610.1 (Oryza sativa), 5'ss of exon 2
lower sequence: PP1S282_25V6.1 (Physcomitrella patens), 5'ss of exon 2
GCGAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttactgatttcctgtgatgtgcttgaaatggcc-tctgccatttgcgactattttctgttgttcagtaatgtaattcgccgaactgctttgtgtgccttccag
||  | || |||||||||||| | ||||||||||||||||| ||||| |||||||| |||||||| || || || || ||||||  ||   |||    |||  |  |    |||    |  ||     | | ||  | |||  ||  | || |  ||     |  || ||     | |||       
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagt--accattttgaactgaattcatacctatgtttgtgagcggaaggtggcttgtatctagtgcactgttagataggcttcttaaatgaaacttttgc-------

upper sequence: LOC_Os01g25610.1 (Oryza sativa), 5'ss of exon 2
lower sequence: PP1S461_1V6.1 (Physcomitrella patens), 5'ss of exon 2
GCGAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttactgatttcctgtgatgtgcttgaaatggcctctgccatttgcgactattttctgttgttcagtaatgtaattcgccgaactgctttgtgtgccttccag
||  | || |||||||||||||| ||||||||||||||||||||||| |||||||| |||||| | || || || || |||||||    |    ||  |||  | |    |     |||||| ||   |   | ||        || |    ||  ||||   | | ||  | |    ||| ||  
GCTCGTGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcctag----cccttgacttccc---acctatctctgc-atcctcattttttaaaatccttttataggtggcattctgtggaatgaatcgcccacctacctt

upper sequence: LOC_Os01g25610.1 (Oryza sativa), 5'ss of exon 2
lower sequence: PP1S38_194V6.1 (Physcomitrella patens), 5'ss of exon 2
GCGAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttactgatttcctgtgatgtgcttgaaatggcctctgccatttgcgactattttctgttgttcagtaatg-taattcgccgaactgctttgtgtgccttccag
||  | || |||||||||||| | |||||||||||||| ||||  || |||||||| |||||| | || || || || || ||||  |   ||  |  | || |   |||    ||   | | ||||| | | |  |  ||  |||  ||  || | ||      | | |  || | | |       
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtaagttctcacgttgacc-taatttcgctga---tgctagtactatttgtgtcgacgtcgtga-gttaggttgtggttatatttttacccgaattctcttcgac----

upper sequence: LOC_Os01g25610.1 (Oryza sativa), 5'ss of exon 2
lower sequence: EFJ26570 (Selaginella moellendorffii), 5'ss of exon 2
GCGAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttactgatttcctgtgatgtgcttgaaatggcctctgccatttgcgactattttctgttgttcagtaatgtaattcgccgaactgctttgtgtgccttccag
| | | ||   |||||||||||| |||  ||||||||| |||||||| ||||||||   |||||||||||| || || || ||| | ||  |  ||| || | | |       |  |  |||   |  || |    ||   || | |||                                     
GTGCGCGGGCCGAAGAAGCATCTGAAGGTGCTCAATGCCCCCAAGCATTGGATGCTGAGCAAGCTCGGCGGTGCCTTCgtaagtct-ctcttcccctttgtttttcccaggtagatccgtgc-gctcacggcggccttgc-ttttccag-------------------------------------

upper sequence: LOC_Os01g25610.1 (Oryza sativa), 5'ss of exon 2
lower sequence: EFJ14824 (Selaginella moellendorffii), 5'ss of exon 2
GCGAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttactgatttcctgtgatgtgcttgaaatggcctctgccatttgcgactattttctgttgttcagtaatgtaattcgccgaactgctttgtgtgccttccag
| | | ||   ||||||||||||||||  ||||||||| |||||||| ||||||||   |||||||||||| || ||||| ||| | ||| |  ||| || ||| |   |  | |   |   |  |  || |    ||   || | |||                                     
GTGCGCGGGCCGAAGAAGCATCTCAAGGTGCTCAATGCCCCCAAGCATTGGATGCTGAGCAAGCTCGGCGGTGCCTTTgtaagtat-ctgttcccctttgttgtccc--aggtagatccgtgcgctcacggcggccttgc-ttttccag-------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87024077|gb|CI291730.1|CI291730
EST:     GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTT                         GCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
genomic: GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttac ... tgccttccagGCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
EST: gi|88571365|gb|CI662738.1|CI662738
EST:     GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTT                         GCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCCT
genomic: GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttac ... tgccttccagGCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCC-T
EST: gi|87007839|gb|CI287683.1|CI287683
EST:     GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTT                         GCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
genomic: GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttac ... tgccttccagGCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
EST: gi|88358658|gb|CI618746.1|CI618746
EST:     GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTT                         GCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
genomic: GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttac ... tgccttccagGCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
EST: gi|117249752|gb|CT863374.1|CT863374
EST:     GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTT                         GCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAGTGCCTGCCCCTG
genomic: GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttac ... tgccttccagGCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
EST: gi|88423077|gb|CI613378.1|CI613378
EST:     GGCTCAATGCGCCAAAGCACTGGATGCTAGACAAGCTCGGCGGAGCTTTT                         GCCCCCAAGCCATCGTATGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
genomic: GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttac ... tgccttccagGCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
EST: gi|33661683|gb|CF292650.1|CF292650
EST:     GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTT                         GCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
genomic: GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttac ... tgccttccagGCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
EST: gi|218492817|gb|FG968356.1|FG968356
EST:     CCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTT                         GCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
genomic: CCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttac ... tgccttccagGCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
EST: gi|33677983|gb|CF306222.1|CF306222
EST:     GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTT                         GCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
genomic: GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttac ... tgccttccagGCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
EST: gi|33828630|gb|CF340134.1|CF340134
EST:     GGCTCAATGCGCCCAAGCACTGGATGCTCCACAAGCTCGGCGGAGCTTTT                         GCCCCCAAGCCATCGTCTGGACCTCACACGCCCAGGGAATGCCTGCCCCTG
genomic: GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttac ... tgccttccagGCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
EST: gi|58682645|gb|CK071332.1|CK071332
EST:     GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTT                         GCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
genomic: GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttac ... tgccttccagGCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
EST: gi|86906924|gb|CI291271.1|CI291271
EST:     GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTT                         GCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
genomic: GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttac ... tgccttccagGCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
EST: gi|88725669|gb|CI748928.1|CI748928
EST:     GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTT                         GCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
genomic: GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttac ... tgccttccagGCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
EST: gi|88431411|gb|CI576941.1|CI576941
EST:     GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTT                         GCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
genomic: GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttac ... tgccttccagGCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
EST: gi|58686532|gb|CK075219.1|CK075219
EST:     GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTT                         GCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCGGCCCCTG
genomic: GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttac ... tgccttccagGCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
EST: gi|88424643|gb|CI606442.1|CI606442
EST:     GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTT                         GCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
genomic: GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttac ... tgccttccagGCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
EST: gi|218494994|gb|FG969750.1|FG969750
EST:     TGCTCGACAAGCTCGGCGGAGCTTTT                         GCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGTGAGTGCCTTCCCCTG
genomic: TGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttac ... tgccttccagGCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
EST: gi|33829204|gb|CF340424.1|CF340424
EST:     GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTT                         GCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
genomic: GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttac ... tgccttccagGCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
EST: gi|88723386|gb|CI746896.1|CI746896
EST:     GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTT                         GCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
genomic: GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttac ... tgccttccagGCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
EST: gi|218504837|gb|FG949405.1|FG949405
EST:     TGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTT                         GCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAGTGCCTTCCCCTG
genomic: TGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttac ... tgccttccagGCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
EST: gi|88325817|gb|CI649654.1|CI649654
EST:     GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTT                         GCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
genomic: GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttac ... tgccttccagGCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
EST: gi|88358593|gb|CI617679.1|CI617679
EST:     GGCTCAATGCGCCCAAGAACTGGATGCTCGACAAGCTCGG-GGAGCTTTT                         GCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
genomic: GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttac ... tgccttccagGCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
EST: gi|86907280|gb|CI292843.1|CI292843
EST:     GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTT                         GCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
genomic: GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttac ... tgccttccagGCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
EST: gi|218497016|gb|FG965105.1|FG965105
EST:     CTGGATGCTCGACAAGCTCGGCGGAGCTTTT                         GCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAGTGCCTTCCCCTG
genomic: CTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttac ... tgccttccagGCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
EST: gi|88692017|gb|CI735592.1|CI735592
EST:     GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTT                         GCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
genomic: GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttac ... tgccttccagGCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
EST: gi|88732202|gb|CI757050.1|CI757050
EST:     GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTT                         GCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
genomic: GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttac ... tgccttccagGCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
EST: gi|88365015|gb|CI616434.1|CI616434
EST:     GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTT                         GCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
genomic: GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttac ... tgccttccagGCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
EST: gi|86906906|gb|CI291262.1|CI291262
EST:     GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTT                         GCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
genomic: GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttac ... tgccttccagGCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
EST: gi|163929108|gb|EG713029.1|EG713029
EST:     GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTT                         GCCCCCAAGCCATCGTCTGGA
genomic: GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttac ... tgccttccagGCCCCCAAGCCATCGTCTGGA
EST: gi|88387470|gb|CI582988.1|CI582988
EST:     GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTT                         GCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
genomic: GGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttac ... tgccttccagGCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
EST: gi|58675811|gb|CK064498.1|CK064498
EST:     GCTCAATGCGCCCAAGCACTGGAGTGCTCGACAAGCTCGGCGGAGCTTTT                         GCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG
genomic: GCTCAATGCGCCCAAGCACTGGA-TGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttac ... tgccttccagGCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 72 (downstream exon)
Score: 34

GCGAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttac ... tgccttccagGCCCCCAAGCCATCGTCTGGACCTCACAAGTCCAGGGAATGCCTGCCCCTGATCCTCATCATCAGGAACAGGTTGAAGTATGCGCTGACATACCGTGAGG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCGAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTTgtgagtttactgatttcctgtgatgtgcttgaaatggcctctgccatttgcgactattttctgttgttcagtaatgtaattcgccgaactgctttgtgtgccttccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT