1 5' 3' | 2 5' 3' | 3 5' 3' |
AAACTCGGTTTCGACGAGGAGGTATTCATCGTCGTCGATCTCAAGAAGGGCGTCGTCTCCAAAGgtagagctttgtccgtcgactctgtctttgtctgtcgcgtcatcgtactgaataagctctgtttttgtcag
species | Oryza sativa |
transcript | LOC_Os01g25500.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGAGGAGGTATTCATCTTCTTCGATCTCAAGAAGGGCGTCGTCTCCAAAG GGCCGTACGAGGGGAAGCCAGACGCGACCTTCTCCTTCACGGACGACGATTEST: gi|29688441|gb|CB684716.1|CB684716
genomic: CGAGGAGGTATTCATCGTCGTCGATCTCAAGAAGGGCGTCGTCTCCAAAGgtagagcttt ... tttttgtcagGGCCGTACGAGGGGAAGCCAGACGCGACCTTCTCCTTCACGGACGACGATT
EST: CGAGGAGGTATTCATCGTCGTCGATCTCAAGAAGGGCGTCGTCTCCAAAG GGCCGTACGAGGGGAAGCCAGACGCGACCTTCTCCTTCACGGACGACGATTEST: gi|58031313|gb|CX728856.1|CX728856
genomic: CGAGGAGGTATTCATCGTCGTCGATCTCAAGAAGGGCGTCGTCTCCAAAGgtagagcttt ... tttttgtcagGGCCGTACGAGGGGAAGCCAGACGCGACCTTCTCCTTCACGGACGACGATT
EST: CGAGGAGGTATTCATCGTCGTCGATCTCAAGAAGGGCGTCGTCTCCAAAG GGCCGTACGAGGGGAAGCCAGACGCGACCTTCTCCTTCACGGACGACGATT
genomic: CGAGGAGGTATTCATCGTCGTCGATCTCAAGAAGGGCGTCGTCTCCAAAGgtagagcttt ... tttttgtcagGGCCGTACGAGGGGAAGCCAGACGCGACCTTCTCCTTCACGGACGACGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACTCGGTTTCGACGAGGAGGTATTCATCGTCGTCGATCTCAAGAAGGGCGTCGTCTCCAAAGgtagagctttgtccgtcgactctgtctttgtctgtcgcgtcatcgtactgaataagctctgtttttgtcag
- - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - AAGAAG