1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GAGGCCATCTGGATGCATGTTAAAACCAGTTCCTAGTATCACCCCAGTGGCTGATGGTGGTTCTAGTCTTCTCAGCTTCAAAAAGAAGGATCTGACTTGGgtattctgctttggatagttattgtccagtattatttcttgatatatgactattgtgttattgttttacctgtgtctcactaaacttttactcctgcag
species | Oryza sativa |
transcript | LOC_Os01g25330.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTGATGGTGGTTCTAGTCTTCTCAGCTTCAAAAAGAAGGATCTGACTTGG GTATGTCAGCAAGGTGCTGATTATGTTGAACTTTTTATATACCTTGGAGAAEST: gi|88427266|gb|CI586814.1|CI586814
genomic: CTGATGGTGGTTCTAGTCTTCTCAGCTTCAAAAAGAAGGATCTGACTTGGgtattctgct ... actcctgcagGTATGTCAGCAAGGTGCTGATTATGTTGAACTTTTTATATACCTTGGAGAA
EST: CTGATGGTGGTTCTAGTCTTCTCAGCTTCAAAAAGAAGGATCTGACTTGG GTATGTCAGCAAGGTGGTGATTAEST: gi|88419702|gb|CI686609.1|CI686609
genomic: CTGATGGTGGTTCTAGTCTTCTCAGCTTCAAAAAGAAGGATCTGACTTGGgtattctgct ... actcctgcagGTATGTCAGCAAGGTGCTGATTA
EST: CTGATGGTGGTTCTAGTCTTCTCAGCTTCAAAAAGAAGGATCTGACTTGG GTATGTCAGCAAGGTGCTGATTATGTTGAACTTTTTATATACCTTGGAGAAEST: gi|88591347|gb|CI708275.1|CI708275
genomic: CTGATGGTGGTTCTAGTCTTCTCAGCTTCAAAAAGAAGGATCTGACTTGGgtattctgct ... actcctgcagGTATGTCAGCAAGGTGCTGATTATGTTGAACTTTTTATATACCTTGGAGAA
EST: CTGATGGTGGTTCTAGTCTTCTCAGCTTCAAAAAGAAGGATCTGACTTGG GTATGTCAGCAAGGTGCTGATTATGTTGAACTTTTTATATACCTTGGAGAAEST: gi|88584489|gb|CI702046.1|CI702046
genomic: CTGATGGTGGTTCTAGTCTTCTCAGCTTCAAAAAGAAGGATCTGACTTGGgtattctgct ... actcctgcagGTATGTCAGCAAGGTGCTGATTATGTTGAACTTTTTATATACCTTGGAGAA
EST: CTGATGGTGGTTCTAGTCTTCTCAGCTTCAAAAAGAAGGATCTGACTTGG GTATGTCAGCAAGGTGCTGATTATGTTGAACTTTTTATATACCTTGGAGAAEST: gi|88589573|gb|CI705469.1|CI705469
genomic: CTGATGGTGGTTCTAGTCTTCTCAGCTTCAAAAAGAAGGATCTGACTTGGgtattctgct ... actcctgcagGTATGTCAGCAAGGTGCTGATTATGTTGAACTTTTTATATACCTTGGAGAA
EST: CTGATGGTGGTTCTAGTCTTCTCAGCTTCAAAAAGAAGGATCTGACTTGG GTATGTCAGCAAGGTGCTGATTATGTTGAACTTTTTATATACCTTGGAGAA
genomic: CTGATGGTGGTTCTAGTCTTCTCAGCTTCAAAAAGAAGGATCTGACTTGGgtattctgct ... actcctgcagGTATGTCAGCAAGGTGCTGATTATGTTGAACTTTTTATATACCTTGGAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGCCATCTGGATGCATGTTAAAACCAGTTCCTAGTATCACCCCAGTGGCTGATGGTGGTTCTAGTCTTCTCAGCTTCAAAAAGAAGGATCTGACTTGGgtattctgctttggatagttattgtccagtattatttcttgatatatgactattgtgttattgttttacctgtgtctcactaaacttttactcctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG