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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaatccacgccctcttctagcttccgcgcgtgtgcgccatctgctttgatagcccagagtcgccaaaagtctctagtagattcatgtatcatgt...

Basic information

species Oryza sativa
transcript LOC_Os01g19840.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g19840.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G009894_T01 (Zea mays), 5'ss of exon 2
GGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaatccac---gccctcttctagcttccgcgcgtgtgcgccatctgctttgatagcccagagtcgccaaaagtctctagtagattcatgtatcatgt
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||   ||  ||        | |||  | ||  | |||  | |     ||    |||    |||||| | ||   ||   ||   || ||||||| | || 
GGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGCATCAAGAAGCCCAAGCGCCACCGGCAGACCTCCACCAAGGGGgtaagatgatttacttgatgtccctcttccgtcgtcccgttcg-gttgattgtgcagatgcgtcagagtggtcattggttgataccggaatcatgtagc-tg-

upper sequence: LOC_Os01g19840.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G147791_T03 (Zea mays), 5'ss of exon 2
GGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaatccacgccctcttctagcttccgcgcgtgtgcgccatctgctttgatagcccagagtcgccaaaagtctctagtagattcatgtatcatgt--
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||  |||   | ||      |     ||   |||      |   || ||    |||   | ||| |     |||  | ||  || |  | |||||||  
GGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTTCAAGGCGCACAAGAACGGCATTAAGAAACCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagataatttgctcctgacgttcctcacccgtcgtcccattcgattgattgtgcagct--gcgtcactggcggtcattggttcatgcgagaatcatgtaa

upper sequence: LOC_Os01g19840.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA09G04280.1 (Glycine max), 5'ss of exon 2
GGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaatccacgccctct-tctagcttccgcgcgtgtgcgccatctgctttgatagcccagagtcgccaaaagtctctagtagattcatgtatcatgt--------------------------------------------------------------------
    ||||||||||| ||||| || ||||| ||||| |||||||| ||||| ||||| |||||||| |||||| | || ||||| || |||||||| ||||||  |     | | | |||| |||  ||  | | |     | |  |    |||    |  |    |  |    |  |    ||  ||| || | ||  ||                                                                    
---AAAGTCGAAGAATCACACAGCACACAATCAGTCCTACAAGGCCCACAAAAACGGCATCAAGAAACCCAAGAGGCATCGCCACACTTCCACCAAAGGGGTAgtctctctctctctctctctctctctctctctctctctctcttttatgtttttgggttctcttttactctgatacatatgtttatttattt-tcgggtaatttaattatgctttttttaacaaaataaataaatttatgcgtttgtgttgttggcaattggtgtag

upper sequence: LOC_Os01g19840.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA07G37060.1 (Glycine max), 5'ss of exon 2
GGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaatccacgccctcttctagct---tccgcgcgtgtgcgccatctgctt--tgatagcccagagtcgcc-----aaaagtctctagtagattcatgtatcat-gt---------------
||| ||||||||||||||||| || ||||||||||| |||||||| |||||||| || ||||| ||||| ||| | |||||||| || |||||||| ||||||  |   ||  |      ||||   |   ||  ||  | |      || | |   |   |   || |  ||       ||| ||   |  |   || |||  |  | ||               
GGCTAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCCACAAGAATGGCATCAAAAAGCCAAAGAGGCACCGCCACACTTCCACCAAAGGGgtattctcctcttcttttctttctctatcgatctacgtttatatattttccgatgaattgcatttcatacccgtttttttaaatgtaatttttgttttaatgatttgttgttggcaattcatatag

upper sequence: LOC_Os01g19840.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA17G03550.2 (Glycine max), 5'ss of exon 2
GGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaatccacgccctcttctagcttccgcgcgtg-tgcgccatctgctttgatagcccagagtcgccaaaagtctctagtagattcatgtatcatgt
||| ||||||||||||||||| || ||||||||||| |||||||| || ||||| || ||||| ||||| ||| | || ||||| || |||||||| ||||||  | | ||  | |    || ||  ||        | ||   |||    ||| ||| |||    |         |   | | | |||  ||||      
GGCAAAGTCGAAGAACCACACCGCTCACAACCAGTCCTACAAGGCCCATAAGAATGGCATCAAAAAGCCAAAGAGGCATCGCCACACTTCCACCAAAGGGgtattctactcttctcttatttttatttttattttccgatgattcatt---tttcatatccctcgtttatttttttttgttggca-atttttgtag-----

upper sequence: LOC_Os01g19840.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA09G04280.2 (Glycine max), 5'ss of exon 1
GGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaatccacgccctct-tctagcttccgcgcgtgtgcgccatctgctttgatagcccagagtcgccaaaagtctctagtagattcatgtatcatgt--------------------------------------------------------------------
||| ||||||||||| ||||| || ||||| ||||| |||||||| ||||| ||||| |||||||| |||||| | || ||||| || |||||||| ||||||  |     | | | |||| |||  ||  | | |     | |  |    |||    |  |    |  |    |  |    ||  ||| || | ||  ||                                                                    
GGCAAAGTCGAAGAATCACACAGCACACAATCAGTCCTACAAGGCCCACAAAAACGGCATCAAGAAACCCAAGAGGCATCGCCACACTTCCACCAAAGGGgtagtctctctctctctctctctctctctctctctctctctctcttttatgtttttgggttctcttttactctgatacatatgtttatttattt-tcgggtaatttaattatgctttttttaacaaaataaataaatttatgcgtttgtgttgttggcaattggtgtag

upper sequence: LOC_Os01g19840.1 (Oryza sativa), 5'ss of exon 2
lower sequence: AT3G06700.3 (Arabidopsis thaliana), 5'ss of exon 2
GGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaatccacgccctcttctagcttccgcgcgtgtgcgccatctgctttgatagcccagagtcgccaaaagtctcta-gtagattcatgtatcatgt
||||||||||||||| ||||||||||| |||||||||   || || ||||||||||| ||||||||||| | | | ||||| || ||| | ||||  || ||||| |  ||      |  ||||| | |   |   | |  |      | | |  |     ||  | |   |  |  | || ||  | | |||| |||   
GGCCAAGTCGAAGAATCACACGGCGCATAACCAGTCGGCGAAAGCCCACAAGAACGGAATCAAGAAGCCAAGGAGACACCGTCACACCCCAACCAGAGGAgtaagtc--tcttattacagttctaaccta-actgatttcagattcgggttatagtgttggaggtttgattattgcgtttatgtgaaatgatgtttcag--

upper sequence: LOC_Os01g19840.1 (Oryza sativa), 5'ss of exon 2
lower sequence: AT3G06680.3 (Arabidopsis thaliana), 5'ss of exon 2
GGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaatccacgccctcttctag-cttccgcgcgtgtgcgccatctgctttgatagcccagagtcgccaaaagtctctag---tagat-tcatgtatcatgt----------------------------------
||| || |||||||| |||||||||||||| |||||   ||||||||| |||||||| ||||||||||| | | | ||||| || ||  | ||||  || |||||  | ||   |     || ||  | |     ||  | |    |||| | | | |    | ||     || | | |  ||     ||| | |  |  || ||                                  
GGCGAAATCGAAGAATCACACGGCGCACAATCAGTCTGCCAAGGCGCATAAGAACGGAATCAAGAAGCCAAGGAGACACCGTCACACACCAACCAGAGGAgtaag--agtctctgttacattttaaacctataaacgattacagattctgatgttacattttaaagctataaacaattttcagattcggatgttaccttccaagtttgatatttaatctatttttgtgaaatgttgcag

upper sequence: LOC_Os01g19840.1 (Oryza sativa), 5'ss of exon 2
lower sequence: Vv05s0077g01220.t01 (Vitis vinifera), 5'ss of exon 1
GGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaatccacgccctcttctagcttccgcgcgtgtgcgccatctgctttgatagcccagagtcgccaaaagtctctagtagattcatgtatcatgt-
||| ||||||||||||||||| || |||||||| ||||||||||| ||||||||||| ||||||||||||      ||||||||  | |||||||| |||||||     || ||      ||     || | | | | |   |       | ||  |     ||  ||   ||  | | |  |  | ||    || |    
GGCGAAGTCGAAGAACCACACAGCTCACAACCAATCGTACAAGGCCCACAAGAACGGCATCAAGAAGCCCCGCAAACACCGCCACGCTTCCACCAAAGGGgtaa-tttctcaactttgatttactcttttccccccttttttctgaagaatatgtgatt---gatgcgatgaatttgtgttttgaaatctgaaatgaacag

upper sequence: LOC_Os01g19840.1 (Oryza sativa), 5'ss of exon 2
lower sequence: Vv07s0005g01340.t01 (Vitis vinifera), 5'ss of exon 2
GGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaatccacgccctcttc-tagcttccgcgcgtgtgcgccatctgctttgatagcccagagtcgccaaaagtctctagtagattcatgtatcatgt-------------------------------
||| ||||||||||||||||| || ||||||||||| ||||| || |||||||| || |||||||| |||      |||||||| ||||||||||| |||||  |  | | | | |  | ||  |  |||||   ||| ||     |    |||  |         ||       |  | |    | ||   ||   |||                                
GGCGAAGTCGAAGAACCACACTGCCCACAACCAGTCCTACAAAGCCCACAAGAATGGAATCAAGAAACCCCGAAAGCACCGCCACACCTCCACCAAAGGGgtttg--atttctctctgttttaatctcttccaatcgtttgtttttttccttttacttttgtgatctccttggtgggtttt--ctggtttgagtgctatggtgtttgatttcttttatttgcattggcgtag

upper sequence: LOC_Os01g19840.1 (Oryza sativa), 5'ss of exon 2
lower sequence: PP1S58_102V6.1 (Physcomitrella patens), 5'ss of exon 2
GGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaag---ccaatcca--cgccctcttctagcttccgcgcgtgtgcgccatctgctttgatagcccagagtcgccaaaagtctctagta-gattcatgtatcatgt
||||||||| ||||| ||||| || ||||||||||| ||||||   |||||||| || |||||||||   |||   |||    |  |||| |  |||||||| ||   |      |     | | || ||  ||       | |    |||||  |||  |     |      ||  || | || | |  ||||   ||       
GGCCAAGTCCAAGAATCACACCGCACACAACCAGTCCTACAAGAACCACAAGAATGGTATCAAGAAGGTTAAGAAACACAAATATGCCTCAAGGAAGGGGgtgagtatcttgcttagctttctttttttaaattgtttttat-tatttcatctagtttcgttatgtatcacaacctcaaatgtccaatgtgattttggtga-----

upper sequence: LOC_Os01g19840.1 (Oryza sativa), 5'ss of exon 2
lower sequence: PP1S79_253V6.2 (Physcomitrella patens), 5'ss of exon 2
GGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaatccac---gccctcttctagcttccgcgcgtgtgcgccatctgctttgatagcccagagtcgccaaaagtctctagtagattcatgtatcatgt
||| ||||| ||||||||||| |||||||||||||| ||||||   |||||||| || |||||||||   |||   ||     | | ||| |  ||||||||||||   |||||   ||       |  | |      || | | | |    || ||| |    |  ||       | | | || |  |||    | | ||  
GGCGAAGTCCAAGAACCACACTGCGCACAACCAGTCCTACAAGAACCACAAGAATGGTATCAAGAAGGTTAAGAAGCATAAATACATCTCAAGGAAGGGGgtaagcgtttccacttggcttgtcgatgccgtttttcagttttctctaagcactgtga-attttactgtgtatcgtactttttaatgaattgg-attttata-

upper sequence: LOC_Os01g19840.1 (Oryza sativa), 5'ss of exon 2
lower sequence: EFJ26059 (Selaginella moellendorffii), 5'ss of exon 1
GGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaatccacgccctcttctagcttccgcgcgtgtgcgccatctgctttgatagcccagagtcgccaaaagtctctagtagattcatgtatcatgt
||| ||||||||||| ||||| || ||||||||||||   |||||||||   || || ||||||||||||||| | || ||| | |||||||  || ||||||||   |     |   |||       |  | |  ||  ||           |  ||                                          
GGCGAAGTCGAAGAATCACACTGCCCACAACCAGTCGAGGAAGGCGCACCGCAATGGCATCAAGAAGCCCAAGAGGCAGCGCTACACCTCCAAGAAAGGGgtaagtaga-----gatttctctagaaatttgtgattgatcgatccgaataccggcag------------------------------------------

upper sequence: LOC_Os01g19840.1 (Oryza sativa), 5'ss of exon 2
lower sequence: EFJ14460 (Selaginella moellendorffii), 5'ss of exon 1
GGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaatccacgccctcttctagcttccgcgcgtgtgcgccatctgctttgatagcccagagtcgccaaaagtctctagtagattcatgtatcatgt
||| ||||||||||| ||||| || ||||||||||||   |||||||||   || || ||||||||||||||| | || ||| | |||||||  || ||||||||   |     |   |||       |  | |  ||  ||           |  ||                                          
GGCGAAGTCGAAGAATCACACTGCCCACAACCAGTCGAGGAAGGCGCACCGCAATGGCATCAAGAAGCCCAAGAGGCAGCGCTACACCTCCAAGAAAGGGgtaagtaga-----gatttctatagaaatttgtgattgatcgatccgaataccggcag------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|55439294|gb|CV732950.1|CV732950
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|88738047|gb|CI761555.1|CI761555
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|88424986|gb|CI562301.1|CI562301
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|33671023|gb|CF299262.1|CF299262
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|88436687|gb|CI691421.1|CI691421
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|55434606|gb|CV730426.1|CV730426
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|88980099|gb|CI026389.1|CI026389
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|117231110|gb|CT860196.1|CT860196
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGGTATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|88851888|gb|CI679446.1|CI679446
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|88517244|gb|CI444898.1|CI444898
EST:     AGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|33688330|gb|CF316569.1|CF316569
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|33682049|gb|CF310288.1|CF310288
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|5004671|gb|AU069846.1|AU069846
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|89183613|gb|CI046178.1|CI046178
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|55435158|gb|CV730709.1|CV730709
EST:     GAACGGGATCAATTATGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: GAACGGGATCAA-GAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|568211|gb|D39046.1|D39046
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|58654039|gb|CK042719.1|CK042719
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGGTATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|15850033|gb|BI798309.1|BI798309
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCC-AAGTTCCTGAGGAACCA-AGGTATTCCAGGAACGCATAACCA
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAA-GCATAACAA
EST: gi|88296219|gb|CI667609.1|CI667609
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|55438558|gb|CV732576.1|CV732576
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|11370695|gb|AU165000.1|AU165000
EST:     AGAACGGGATCAAGAAGCCCAAGCGCNACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATNACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|55431817|gb|CV728929.1|CV728929
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|88242776|gb|CI242625.1|CI242625
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|88529338|gb|CI457646.1|CI457646
EST:     CCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: CCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|55440231|gb|CV733425.1|CV733425
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|33672283|gb|CF300522.1|CF300522
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAGGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|33673016|gb|CF301255.1|CF301255
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCATACCTCCACCAAGGGG                         ATGGACCCAAGGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|55437804|gb|CV732194.1|CV732194
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|86821513|gb|CI266878.1|CI266878
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|55433299|gb|CV729712.1|CV729712
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|88979209|gb|CI025711.1|CI025711
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|55435314|gb|CV730788.1|CV730788
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|88424064|gb|CI689764.1|CI689764
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|88972862|gb|CI019481.1|CI019481
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|55440229|gb|CV733424.1|CV733424
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|8251057|gb|AU091339.1|AU091339
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|55435160|gb|CV730710.1|CV730710
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|55432968|gb|CV729507.1|CV729507
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|55437478|gb|CV731994.1|CV731994
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|33682050|gb|CF310289.1|CF310289
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|88540807|gb|CI468878.1|CI468878
EST:     CAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: CAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|33672184|gb|CF300423.1|CF300423
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAGGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|568179|gb|D39014.1|D39014
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|86910574|gb|CI294714.1|CI294714
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|88266990|gb|CI378925.1|CI378925
EST:     A-AACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|33806643|gb|CF329204.1|CF329204
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGGAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|88456800|gb|CI544737.1|CI544737
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|86255452|gb|CI065129.1|CI065129
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGGCCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|163926236|gb|EG712858.1|EG712858
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|55431815|gb|CV728928.1|CV728928
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|88481832|gb|CI419103.1|CI419103
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|55432966|gb|CV729506.1|CV729506
EST:     AGAACGGGATCAAGATTCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|33812925|gb|CF332350.1|CF332350
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|88992880|gb|CI035842.1|CI035842
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|33806761|gb|CF329262.1|CF329262
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|88827226|gb|CI777791.1|CI777791
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|11173074|gb|AU164600.1|AU164600
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|33673084|gb|CF301323.1|CF301323
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|55438636|gb|CV732615.1|CV732615
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
EST: gi|55436452|gb|CV731362.1|CV731362
EST:     AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGG                         ATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG
genomic: AGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 72 (upstream exon), 52 (downstream exon)
Score: 96

GGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaat ... atgtttatagATGGACCCAAAGTTCCTGAGGAACCAGAGATATTCCAGGAAGCATAACAAGAAGAGTGGTGAGGCTGAATCCGAGGAGTAAGATGGAAGTTGTCCTTTCG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCCAAGTCGAAGAACCACACGGCGCACAACCAGTCGTACAAGGCGCACAAGAACGGGATCAAGAAGCCCAAGCGCCACCGCCAGACCTCCACCAAGGGGgtaagccaatccacgccctcttctagcttccgcgcgtgtgcgccatctgctttgatagcccagagtcgccaaaagtctctagtagattcatgtatcatgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccacgcc