1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AAAACAAACCCAGTGGTGGCTGAGATCTTCTCGCTCATGTCCAGGGATGAGGCCCGGCACGCTGGgtaagtagtagtaacacactctaaattatttccttgcacaatgacacaatgtgattgcaagcagccattacaactcaaattgaactgtaccatgactagagaaaatatttaagcttcagttttagggcgtccatttcaactcaattgagtaagcaattcaactgaattgtctgcatgatttatgctgttcag
species | Oryza sativa |
transcript | LOC_Os01g17170.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTGGCTGAGATCTTCTCGCTCATGTCCAGGGATGAGGCCCGGCACGCTGG GTTCTTGAACAAGGGGCTGTCTGATTTCAACTTGGCACTGGACCTCGGGTTEST: gi|300216174|gb|HO087959.1|HO087959
genomic: GTGGCTGAGATCTTCTCGCTCATGTCCAGGGATGAGGCCCGGCACGCTGGgtaagtagta ... tgctgttcagGTTCTTGAACAAGGGGCTGTCTGATTTCAACTTGGCACTGGACCTCGGGTT
EST: GTGGCTGAGATCTTCTCGCTCATGTCCAGGGATGAGGCCCGGCACGCTGG GTTCTTGAACAAGGGGCTGTCTGATTTCAACTTGGCACTGGACCTCGGGTTEST: gi|29672478|gb|CB668753.1|CB668753
genomic: GTGGCTGAGATCTTCTCGCTCATGTCCAGGGATGAGGCCCGGCACGCTGGgtaagtagta ... tgctgttcagGTTCTTGAACAAGGGGCTGTCTGATTTCAACTTGGCACTGGACCTCGGGTT
EST: GTGGCTGAGATCTTCTCGCTCATGTCCAGGGATGAGGCCCGGCACGCTGG GTTCTTGAACAAGGGGCTGTCTGATTTCAACTTGGCACTGGACCTCGGGTTEST: gi|66912779|gb|CX099627.1|CX099627
genomic: GTGGCTGAGATCTTCTCGCTCATGTCCAGGGATGAGGCCCGGCACGCTGGgtaagtagta ... tgctgttcagGTTCTTGAACAAGGGGCTGTCTGATTTCAACTTGGCACTGGACCTCGGGTT
EST: GTGGCTGAGATCTTCTCGCTCATGTCCANGGATGAGGCCCGGCACGCTGG GTTCTTGAACAAGGGGCTGTCTGATTTCAACTTGGCACTGGACCTCGGGTTEST: gi|38474941|gb|CF959074.1|CF959074
genomic: GTGGCTGAGATCTTCTCGCTCATGTCCAGGGATGAGGCCCGGCACGCTGGgtaagtagta ... tgctgttcagGTTCTTGAACAAGGGGCTGTCTGATTTCAACTTGGCACTGGACCTCGGGTT
EST: GTGGCTGAGATCTACTCGCTCATGTCCANGGATGAGGCCCGGCACGCTGG GTTCTTGAACAAGGGGCTGTCTAGATTTCAACTTGGCACTGGACCTCGGGTEST: gi|29676338|gb|CB672613.1|CB672613
genomic: GTGGCTGAGATCTTCTCGCTCATGTCCAGGGATGAGGCCCGGCACGCTGGgtaagtagta ... tgctgttcagGTTCTTGAACAAGGGGCTGTCT-GATTTCAACTTGGCACTGGACCTCGGGT
EST: GTGGCTGAGATCTTCTCGCTCATGTCCAGGGATGAGGCCCGGCACGCTGG GTTCTTGAACAAGGGGCTGTCTGATTTCAACTTGGCACTGGACCTCGGGTTEST: gi|38471854|gb|CF955985.1|CF955985
genomic: GTGGCTGAGATCTTCTCGCTCATGTCCAGGGATGAGGCCCGGCACGCTGGgtaagtagta ... tgctgttcagGTTCTTGAACAAGGGGCTGTCTGATTTCAACTTGGCACTGGACCTCGGGTT
EST: GTGGCTGAGATCTTCTCGCTCATGTCCAGGGATGAGGCCCGGCACGCTGG GTTCTTGAACAAGGGGCTGTCTGATTTCAACTTGGCACTGGACCTCGGGTTEST: gi|33674878|gb|CF303117.1|CF303117
genomic: GTGGCTGAGATCTTCTCGCTCATGTCCAGGGATGAGGCCCGGCACGCTGGgtaagtagta ... tgctgttcagGTTCTTGAACAAGGGGCTGTCTGATTTCAACTTGGCACTGGACCTCGGGTT
EST: CGGCACGAGGG GTTCTTGAAC-AGGGGCTGTCTGATTTCAACTTGGCACTGGACCTCGGGTTEST: gi|38476267|gb|CF960400.1|CF960400
genomic: CGGCACGCTGGgtaagtagta ... tgctgttcagGTTCTTGAACAAGGGGCTGTCTGATTTCAACTTGGCACTGGACCTCGGGTT
EST: GTGGCTGAGATCTTCTCGCTCATGTCCAGGGATGAGGCCCGGCACGCTGG GTTCTTGAACAAGGGGCTGTCTGATTTCAACTTGGCACTGGACCTCGGGTTEST: gi|38473793|gb|CF957925.1|CF957925
genomic: GTGGCTGAGATCTTCTCGCTCATGTCCAGGGATGAGGCCCGGCACGCTGGgtaagtagta ... tgctgttcagGTTCTTGAACAAGGGGCTGTCTGATTTCAACTTGGCACTGGACCTCGGGTT
EST: GTGGCTGAGATCTTCTCGCTCATGTCCAGGGATGAGGCCCGGCACGCTGG GTTCTTGAACAAGGGGCTGTCTGATTTCAACTTGGCACTGGACCTCGGGTTEST: gi|29619025|gb|CB624037.1|CB624037
genomic: GTGGCTGAGATCTTCTCGCTCATGTCCAGGGATGAGGCCCGGCACGCTGGgtaagtagta ... tgctgttcagGTTCTTGAACAAGGGGCTGTCTGATTTCAACTTGGCACTGGACCTCGGGTT
EST: GTGGCTGAGATCTTCTCGCTCATGTCCAGGGATGAGGCCCGGCACGCTGG GTTCTTGAACAAGGGGCTGTCTGATTTCAACTTGGCACTGGACCTCGGGTTEST: gi|38475252|gb|CF959385.1|CF959385
genomic: GTGGCTGAGATCTTCTCGCTCATGTCCAGGGATGAGGCCCGGCACGCTGGgtaagtagta ... tgctgttcagGTTCTTGAACAAGGGGCTGTCTGATTTCAACTTGGCACTGGACCTCGGGTT
EST: GTGGCTGAGATCTTCTCGCTCATGTCCAGGGATGAGGCCCGGCACGCTGG GTTCTTGAACAAGGGGCTGTCTGATTTCAACTTGGCACTGGACCTCGGGTTEST: gi|29616676|gb|CB621688.1|CB621688
genomic: GTGGCTGAGATCTTCTCGCTCATGTCCAGGGATGAGGCCCGGCACGCTGGgtaagtagta ... tgctgttcagGTTCTTGAACAAGGGGCTGTCTGATTTCAACTTGGCACTGGACCTCGGGTT
EST: GTGGCTGAGATCTTCTCGCTCATGTCCAGGGATGAGGCCCGGCACGCTGG GTTCTTGAACAAGGGGCTGTCTGATTTCAACTTGGCACTGGACCTCGGGTTEST: gi|38474054|gb|CF958186.1|CF958186
genomic: GTGGCTGAGATCTTCTCGCTCATGTCCAGGGATGAGGCCCGGCACGCTGGgtaagtagta ... tgctgttcagGTTCTTGAACAAGGGGCTGTCTGATTTCAACTTGGCACTGGACCTCGGGTT
EST: GTGGCTGAGATCTTCTCGCTCATGTCCAGGGATGAGGCCCGGCACGCTGG GTTCTTGAACAAGGGGCTGTCTGATTTCAACTTGGCACTGGACCTCGGGTTEST: gi|29663604|gb|CB659879.1|CB659879
genomic: GTGGCTGAGATCTTCTCGCTCATGTCCAGGGATGAGGCCCGGCACGCTGGgtaagtagta ... tgctgttcagGTTCTTGAACAAGGGGCTGTCTGATTTCAACTTGGCACTGGACCTCGGGTT
EST: GTGGCTGAGATCTTCTCGCTCATGTCCAGGGATGAGGCCCGGCACGCTGG GTTCTTGAACAAGGGGCTGTCTGATTTCAACTTGGCACTGGACCTCGGGTTEST: gi|2801122|gb|AA754416.1|AA754416
genomic: GTGGCTGAGATCTTCTCGCTCATGTCCAGGGATGAGGCCCGGCACGCTGGgtaagtagta ... tgctgttcagGTTCTTGAACAAGGGGCTGTCTGATTTCAACTTGGCACTGGACCTCGGGTT
EST: GTGGCTGAGATCTTCTCGCTCATGTCCAGGGATGAGGCCCGGCACGCTGG GTTCTTGAACAAGGGGCTGTCTGATTTCAACTTGGCACTGGACCTCGGGTTEST: gi|29620880|gb|CB625891.1|CB625891
genomic: GTGGCTGAGATCTTCTCGCTCATGTCCAGGGATGAGGCCCGGCACGCTGGgtaagtagta ... tgctgttcagGTTCTTGAACAAGGGGCTGTCTGATTTCAACTTGGCACTGGACCTCGGGTT
EST: GTGGCTGAGATCTTCTCGCTCATGTCCAGGGATGAGGCCCGGCACGCTGG GTTCTTGAACAAGGGGCTGTCTGATTTCAACTTGGCACTGGACCTCGGGTT
genomic: GTGGCTGAGATCTTCTCGCTCATGTCCAGGGATGAGGCCCGGCACGCTGGgtaagtagta ... tgctgttcagGTTCTTGAACAAGGGGCTGTCTGATTTCAACTTGGCACTGGACCTCGGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAACAAACCCAGTGGTGGCTGAGATCTTCTCGCTCATGTCCAGGGATGAGGCCCGGCACGCTGGgtaagtagtagtaacacactctaaattatttccttgcacaatgacacaatgtgattgcaagcagccattacaactcaaattgaactgtaccatgactagagaaaatatttaagcttcagttttagggcgtccatttcaactcaattgagtaagcaattcaactgaattgtctgcatgatttatgctgttcag
- - - - - - - - - - GAGATC