1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TCAGCTGGGGAGTTGCTGAGGTGCCACAGATCATAACTAATTACAAGCATAAGTCAACAGAAGGCCTTTCCCTTGCTTTTCTAATGACATGGATTGTTGGgtgagccatttcatcacgttcctgatgtttctaggagacttatactactaatatataatatttgtagttgacagttttatgtgcaatgcagtgcttgatgttctcttgtactcttatgccattacgcag
species | Oryza sativa |
transcript | LOC_Os01g16170.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAGTCAACAGAAGGCCTTTCCCTTGCTTTTCTAATGACATGGATTGTTGG GGACTTTTTTAACCTTATTGGCTGCTTCTTGGAACCTGAGACGEST: gi|29624849|gb|CB629860.1|CB629860
genomic: AAGTCAACAGAAGGCCTTTCCCTTGCTTTTCTAATGACATGGATTGTTGGgtgagccatt ... cattacgcagGGACTTTTTTAACCTTATTGGCTGCTTCTTGGAACCTGAGACG
EST: AAGTCAACAGAAGGCCTTTCCCTTGCTTTTCTAATGACATGGATTGTTGA GGACTTTTTTAACCTTATTGGCTGCTTCTTGGAACCTGAGACGEST: gi|58657684|gb|CK046364.1|CK046364
genomic: AAGTCAACAGAAGGCCTTTCCCTTGCTTTTCTAATGACATGGATTGTTGGgtgagccatt ... cattacgcagGGACTTTTTTAACCTTATTGGCTGCTTCTTGGAACCTGAGACG
EST: AAGTCAACAGAAGGCCTTTCCCTTGCTTTTCTAATGACATGGATTGTTGG GGACTTTTTTAACCTTATTGGCTGCTTCTTGGAACCTGAGACG
genomic: AAGTCAACAGAAGGCCTTTCCCTTGCTTTTCTAATGACATGGATTGTTGGgtgagccatt ... cattacgcagGGACTTTTTTAACCTTATTGGCTGCTTCTTGGAACCTGAGACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAGCTGGGGAGTTGCTGAGGTGCCACAGATCATAACTAATTACAAGCATAAGTCAACAGAAGGCCTTTCCCTTGCTTTTCTAATGACATGGATTGTTGGgtgagccatttcatcacgttcctgatgtttctaggagacttatactactaatatataatatttgtagttgacagttttatgtgcaatgcagtgcttgatgttctcttgtactcttatgccattacgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA