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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTAATTTAGTCAAGTTGTTTGGTTACTGTGTGGATGGAGATCAGCGCCTGCTTATTTATGAATATATGCCATTGGGATCACTAGAAGACCGCCTTCACGgttagtattttattggaaattgtataatatcctctgttagctcctagaaaaacctgaaagttccctaagaatctgtagttgtgttagaaaacattttata...

Basic information

species Oryza sativa
transcript LOC_Os01g15470.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g15470.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G074381_T01 (Zea mays), 5'ss of exon 3
CCTAATTTAGTCAAGTTGTTTGGTTACTGTGTGGATGGAGATCAGCGCCTGCTTATTTATGAATATATGCCATTGGGATCACTAGAAGACCGCCTTCACGgttagt----attttat-tggaaattgtataatatcctctgttagctcctagaaaaacctgaaagttcc--ctaagaatctgtagttgtgttagaaaacattttata
|||||| | |||||  ||  ||| |||||||| ||||| ||||| ||| ||||  ||||||| |||||||||||||||||||||||||| |  || || |||||||     |||||| |   || ||||| ||||||||    ||| ||  ||  ||| | ||   |||  ||   ||| || | ||   | | || ||  || |  
CCTAATCTTGTCAATCTGCATGGGTACTGTGTTGATGGCGATCAACGCTTGCTCGTTTATGAGTATATGCCATTGGGATCACTAGAAGATCATCTACATGgttagttactgttttatgttttaaatgtatgatatcctc----agcaccaggagcaacttaaattatcctacttgtaatttgca-tttcataataatactgttaa--

upper sequence: LOC_Os01g15470.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA15G10360.1 (Glycine max), 5'ss of exon 3
CCTAATTTAGTCAAGTTGTTTGGTTACTGTGTGGATGGAGATCAGCGCCTGCTTATTTATGAATATATGCCATTGGGATCACTAGAAGACCGCCTTCACGgttagtattttattggaaattgtataatatcctctgttagctcctagaaaaacctgaaagttccctaagaatctgtagttgtgttagaaaacattttata------
|| ||| | || || ||  |||| || ||||  ||||| |||||||| |||||| ||||||||| |||||||||||||||  | || || |   | |||||| || |||   ||     ||   | ||||| |    |   || |  |  |   ||         ||  || || ||    | ||| |   ||| ||||       
CCAAATCTTGTGAACTTAATTGGCTATTGTGCTGATGGTGATCAGCGGCTGCTTGTTTATGAATTTATGCCATTGGGATCTTTGGAGGATCATTTACACGgtcag-attgctttcttttttaactgatatctt----tgcttcttcaactattgtgctttcatattataaaactataaa-atattaaatttcatgttatttcaatc

upper sequence: LOC_Os01g15470.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA13G28730.1 (Glycine max), 5'ss of exon 3
CCTAATTTAGTCAAGTTGTTTGGTTACTGTGTGGATGGAGATCAGCGCCTGCTTATTTATGAATATATGCCATTGGGATCACTAGAAGACCGCCTTCACGgttagtattttattggaaattgtataatatcctctgttagctcctagaaaaacctgaaagttcc----cta-agaatctgtagttgtgttagaaaacattttata
|| ||| | || || ||  ||||||| ||||  ||||| |||||||| |||||| |||||||||  ||||||||||||||  | || || |   | || ||| || |||  |||     ||   | ||| | |   ||      |   |   | |  |  ||      ||| | ||| | || ||   |    |  || |     
CCAAATCTTGTGAACTTAATTGGTTATTGTGCTGATGGTGATCAGCGGCTGCTTGTTTATGAATTCATGCCATTGGGATCTTTGGAGGATCATTTACATGgtcag-attgcattcttttttaactgatacctttgcttcttcaattatagtgctttcatattataaagctataaaatatttaatttcatgttgattcaatc----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|25800162|gb|CA756123.1|CA756123
EST:     GCTTATTTATGAATATATGCCATTGGGATCACTAGAAGACCGCCTTCACG                         ATCTCAGACCCGGCCAAGAACCACTAGATTGGACAACACGGATGAAGATTG
genomic: GCTTATTTATGAATATATGCCATTGGGATCACTAGAAGACCGCCTTCACGgttagtattt ... ctttttacagATCTCAGACCCGGCCAAGAACCACTAGATTGGACAACACGGATGAAGATTG
EST: gi|2317565|gb|C22619.1|C22619
EST:     GCTTATTTATGAATATATGCCATTGGGATCACTAGAAGACCGCCTTCACG                         ATCTCAGACCCGGGCCAAGAACCACTAGATTGGGACAACACGGATGNAAGA
genomic: GCTTATTTATGAATATATGCCATTGGGATCACTAGAAGACCGCCTTCACGgttagtattt ... ctttttacagATCTCAGACCCGG-CCAAGAACCACTAGATTGG-ACAACACGGATG-AAGA