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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGGTGGAGGTGCAAGGAATGCAGCAGCATTGGATTATCCAGAAAGGGCGGGTCAACCTATATGCGAGgtactcaaactaaacagcttggtgcttgaattcaattatcttttatgcaacgaaaaaggcacccgccatcacttaagcttgcattaacaccatgtgttct...

Basic information

species Oryza sativa
transcript LOC_Os01g15460.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88572959|gb|CI664530.1|CI664530
EST:     ATGCAGCAGCATTGGATTATCCAGAAAGGGCGGGTCAACCTATATGCGAG                         TATTACATGAAGACTGGGACTTGCAAATTTGGTACCAATTGCAAATATCAC
genomic: ATGCAGCAGCATTGGATTATCCAGAAAGGGCGGGTCAACCTATATGCGAGgtactcaaac ... tgttttacagTATTACATGAAGACTGGGACTTGCAAATTTGGTACCAATTGCAAATATCAC
EST: gi|88306285|gb|CI636670.1|CI636670
EST:     ATGCAGCAGCATTGGATTATCCAGAAAGGGCGGGTCAACCTATATGCGAG                         TATTACATGAAGACTGGGACTTGCAAATTTGGTACCAATTGCAAATATCAC
genomic: ATGCAGCAGCATTGGATTATCCAGAAAGGGCGGGTCAACCTATATGCGAGgtactcaaac ... tgttttacagTATTACATGAAGACTGGGACTTGCAAATTTGGTACCAATTGCAAATATCAC
EST: gi|88306241|gb|CI636626.1|CI636626
EST:     ATGCAGCAGCATTGGATTATCCAGAAAGGGCGGGTCAACCTATATGCGAG                         TATTACATGAAGACTGGGACTTGCAAATTTGGTACCAATTGCAAATATCAC
genomic: ATGCAGCAGCATTGGATTATCCAGAAAGGGCGGGTCAACCTATATGCGAGgtactcaaac ... tgttttacagTATTACATGAAGACTGGGACTTGCAAATTTGGTACCAATTGCAAATATCAC