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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTTTCGAGTGACAAAGCTGACGAACTGCTGTCAACCACTGGAAGGCTCTTCATCAATCCAAGGTTCCAGGAACTGAGGAATGCCACTGCTTTTCCTAAgtgagcctctttccatcctctttggatcgccgaccacttcaattcacatgcactcgcatacaagagagaattttcttcactgaacctcatgtgtgtgttatcttctttttcattcatcag

Basic information

species Oryza sativa
transcript LOC_Os01g14340.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88958306|gb|CI095825.1|CI095825
EST:     TTCATCAATCCAAGGTTCCAGGAACTGAGGAATGCCACTGCTTTTCCTAATCATCA                    
genomic: TTCATCAATCCAAGGTTCCAGGAACTGAGGAATGCCACTGCTTTTCC---T-A--Agtgagcctct ... cattc
EST: gi|88958306|gb|CI095825.1|CI095825
EST:     TTCATCAATCCAAGGTTCCAGGAACTGAGGAATGCCACTGCTTTTCCTAATCATCA                    
genomic: TTCATCAATCCAAGGTTCCAGGAACTGAGGAATGCCACTGCTTTTCC---T-A--Agtgagcctct ... cattc
EST: gi|88968042|gb|CI098284.1|CI098284
EST:     TTCATCAATCCAAGGTTCCAGGAACTGAGGAATGCCACTGCTTTTCCTAA                         GTACTTGTCATTTGTCATTGTCAAGGCTACTGACGCATATGAGGCATTGTG
genomic: TTCATCAATCCAAGGTTCCAGGAACTGAGGAATGCCACTGCTTTTCCTAAgtgagcctct ... cattcatcagGTACTTGTCATTTGTCATTGTCAAGGCTACTGACGCATATGAGGCATTGTG
EST: gi|88968446|gb|CI098688.1|CI098688
EST:     TTCATCAATCCAAGGTTCCAGGAACTGAGGAATGCCACTGCTTTTCCTAA                         GTACTTGTCATTTGTCATTGTCAAGGCTACTGACGCATATGAGGCATTGTG
genomic: TTCATCAATCCAAGGTTCCAGGAACTGAGGAATGCCACTGCTTTTCCTAAgtgagcctct ... cattcatcagGTACTTGTCATTTGTCATTGTCAAGGCTACTGACGCATATGAGGCATTGTG
EST: gi|86484206|gb|CI126839.1|CI126839
EST:     TTCATCAATCCAAGGTTCCAGGAACTGAGGAATGCCACTGCTTTTCCTAA                         GTACTTGTCATTNGTAATTGTCCAAGGCTACTGACGCATATGAGGCATTGT
genomic: TTCATCAATCCAAGGTTCCAGGAACTGAGGAATGCCACTGCTTTTCCTAAgtgagcctct ... cattcatcagGTACTTGTCATTTGTCATTGTC-AAGGCTACTGACGCATATGAGGCATTGT
EST: gi|88968669|gb|CI098861.1|CI098861
EST:     TTCATCAATCCAAGGTTCCAGGAACTGAGGAATGCCACTGCTTTTCCTAA                         GTACTTGTCATTTGTCATTGTCAAGGCTACTGACGCATATGAGGCATTGTG
genomic: TTCATCAATCCAAGGTTCCAGGAACTGAGGAATGCCACTGCTTTTCCTAAgtgagcctct ... cattcatcagGTACTTGTCATTTGTCATTGTCAAGGCTACTGACGCATATGAGGCATTGTG