Sequence
atgc intronic sequence ATGC exonic sequenceCAGATAGCTTTGCAATTGAGTCAGGGAGAGAGATGGCTGGGAGAGAGGATGGAGCAGCAGCAGGAGCCATGGAAGAAGGGCAAGACAGCAAGGAGGTGAAgtgtgagaattcagaggatggaagcaacaccagcagaagatgccaaggcaacgacatgatctccgtccaattcatgcagaaggtacgtatggtgatggtc...
Basic information
species | Oryza sativa |
transcript | LOC_Os01g10530.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86414225|gb|CI068628.1|CI068628EST: GGAGCAGCAGCAGGAGCCATGGAAGAAGGGCAAGACAGCAAGGAGGTGAA CGTGCTCTTCGCAGGGTATGTGTTGAAGTAAATCATAAAATTTCACAGTTA
genomic: GGAGCAGCAGCAGGAGCCATGGAAGAAGGGCAAGACAGCAAGGAGGTGAAgtgtgagaat ... tcgcggtgaaCGTGCTCTTCGCAGGGTATGTGTTGAAGTAAATCATAAAATTTCACAGTTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAGATAGCTTTGCAATTGAGTCAGGGAGAGAGATGGCTGGGAGAGAGGATGGAGCAGCAGCAGGAGCCATGGAAGAAGGGCAAGACAGCAAGGAGGTGAAgtgtgagaattcagaggatggaagcaacaccagcagaagatgccaaggcaacgacatgatctccgtccaattcatgcagaaggtacgtatggtgatggtc
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccgtcc