1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTCAAGAATGTCTTGTAGCTTATATCTTGTTTTTGAGTACATGGAACATGACCTAGCTGGACTAGCTTCTTTTCCTGGAGTGAAATTTACTGAGTCTCAGgtatattgatattacctcttctggaatctgtactcgttattaaatcttattagctgtaaagaaagactaaaggaatatattgcatcctatagtagtcctaaaaaagcctcaagtagctgtttacttaaaatacgagtaaagcaagcgggcaatgatcattctgttgttgcag
species | Oryza sativa |
transcript | LOC_Os01g10430.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACCTAGCTGGACTAGCTTCTTTTCCTGGAGTGAAATTTACTGAGTCTCAG GTTAAATGTTACATGCAGCAGCTACTCTGTGGCCTTGAGCATTGTCATAGTEST: gi|33677544|gb|CF305783.1|CF305783
genomic: ACCTAGCTGGACTAGCTTCTTTTCCTGGAGTGAAATTTACTGAGTCTCAGgtatattgat ... gttgttgcagGTTAAATGTTACATGCAGCAGCTACTCTGTGGCCTTGAGCATTGTCATAGT
EST: ACCTAGCTGGACTAGCTTCTTTTCCTGGAGTGAAATTTACTGAGTCTCAG GTTAAATGTTACATGCAGCAGCTACTCTGTGGCCTTGAGCATTGTCATAGTEST: gi|29619147|gb|CB624159.1|CB624159
genomic: ACCTAGCTGGACTAGCTTCTTTTCCTGGAGTGAAATTTACTGAGTCTCAGgtatattgat ... gttgttgcagGTTAAATGTTACATGCAGCAGCTACTCTGTGGCCTTGAGCATTGTCATAGT
EST: ACCTAGCTGGACTAGCTTCTTTTCCTGGAGTGAAATTTACTGAGTCTCAG GTTAAATGTTACATGCAGCAGCTACTCTGTGGCCTTGAGCATTGTCATAGTEST: gi|29620850|gb|CB625861.1|CB625861
genomic: ACCTAGCTGGACTAGCTTCTTTTCCTGGAGTGAAATTTACTGAGTCTCAGgtatattgat ... gttgttgcagGTTAAATGTTACATGCAGCAGCTACTCTGTGGCCTTGAGCATTGTCATAGT
EST: ACCTAGCTGGACTAGCTTCTTTTCCTGGAGTGAAATTTACTGAGTCTCAG GTTAAATGTTACATGCAGCAGCTACTCTGTGGCCTTGAGCATTGTCATAGTEST: gi|58668580|gb|CK057266.1|CK057266
genomic: ACCTAGCTGGACTAGCTTCTTTTCCTGGAGTGAAATTTACTGAGTCTCAGgtatattgat ... gttgttgcagGTTAAATGTTACATGCAGCAGCTACTCTGTGGCCTTGAGCATTGTCATAGT
EST: ACCTAGCTGGACTAGCTTCTTTTCCTGGAGTGAAATTTACTGAGTCTCAG GTTAAATGTTACATGCAGCAGCTACTCTGTGGCCTTGAGCATTGTCATAGT
genomic: ACCTAGCTGGACTAGCTTCTTTTCCTGGAGTGAAATTTACTGAGTCTCAGgtatattgat ... gttgttgcagGTTAAATGTTACATGCAGCAGCTACTCTGTGGCCTTGAGCATTGTCATAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCAAGAATGTCTTGTAGCTTATATCTTGTTTTTGAGTACATGGAACATGACCTAGCTGGACTAGCTTCTTTTCCTGGAGTGAAATTTACTGAGTCTCAGgtatattgatattacctcttctggaatctgtactcgttattaaatcttattagctgtaaagaaagactaaaggaatatattgcatcctatagtagtcctaaaaaagcctcaagtagctgtttacttaaaatacgagtaaagcaagcgggcaatgatcattctgttgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA