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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGAGGAGGTGGAGGCCTACCGGCGCCGCCGGGAGATCACCGTGGAGGGCCGCGACGTGCCCAAGCCAGTGCGCGAGTTCCGCGATGTCGGATTCCCAGgtttcgtttgctgcgtgctactgctacccttgtcctgcacttactatagtactatgtatgcaatttagatgaacgtgctccaggaggaattggaatttag...

Basic information

species Oryza sativa
transcript LOC_Os01g10050.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g10050.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G143246_T01 (Zea mays), 5'ss of exon 2
GAGGAGGAGGTGGAGGCCTACCGGCGCCGCCGGGAGATCACCGTGGAGGGCCGCGACGTGCCCAAGCCAGTGCGCGAGTTCCGCGATGTCGGATTCCCAGgtttcgtttgctgcgtgctactgctacccttgtcctgcacttactatagtactatgtatgcaatttagatgaacgtgctccaggaggaattggaatttag-------
||||| ||||||||||| ||||| |||||||||||||||||||| || |||||||||||||||||||| ||||| |||||||| ||||| || |||||||||   | ||  || |  || ||| | || | |    | |  |||   ||||  | || |   | | ||  |    || |    |  ||||      ||||       
GAGGAAGAGGTGGAGGCGTACCGCCGCCGCCGGGAGATCACCGTCGACGGCCGCGACGTGCCCAAGCCGGTGCGTGAGTTCCGTGATGTGGGCTTCCCAGgtaatgatt-ttgag-actgctgttgccttcg----gaaactacacaagtaaaaagt-tatgaatcaggaggtgatggtgttcgtcgaatgtttgattagactgctt