1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CATCAGCAGCTCGGAGCTCATCGACGCCAAGCTCGAGGAACGCCGGATCTCCACGGCCAAGCACTGCCCCAGCTGCGGCAACAAGCTCGACTGCAAACCGgtatgtgaagagtgaagtgatcaacttcgttttgcctagctcttttcagtaattgcacacttgcacctcggtcggtagcgagggttcttgggcttcttgctgcctggtgcaaaacttgttcttatggaattaattggtgtaactgcaagaag
species | Oryza sativa |
transcript | LOC_Os01g09550.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCACGGCCAAGCACTGCCCCAGCTGCGGCAACAAGCTCGACTGCAAACCG GATTGGGTGGGGCTACCGGCAGGAGTCAAGTTCGATCCGACGGACCAGGAGEST: gi|29625214|gb|CB630225.1|CB630225
genomic: CCACGGCCAAGCACTGCCCCAGCTGCGGCAACAAGCTCGACTGCAAACCGgtatgtgaag ... ctgcaagaagGATTGGGTGGGGCTACCGGCAGGAGTCAAGTTCGATCCGACGGACCAGGAG
EST: CCACGGCCAAGCACTGCCCCAGCTGCGGCAACAAGCTCGACTGCAAACCG GATTGGGTGGGGCTACCGGCAGGAGTCAAGTTCGATCCGACGGACCAGGAGEST: gi|29625216|gb|CB630227.1|CB630227
genomic: CCACGGCCAAGCACTGCCCCAGCTGCGGCAACAAGCTCGACTGCAAACCGgtatgtgaag ... ctgcaagaagGATTGGGTGGGGCTACCGGCAGGAGTCAAGTTCGATCCGACGGACCAGGAG
EST: CCACGGCCAAGCACTGCCCCAGCTGCGGCAACAAGCTCGACTGCAAACCG GATTGGGTGGGGCTACCGGCAGGAGTCAAGTTCGATCCGACGGACCAGGAG
genomic: CCACGGCCAAGCACTGCCCCAGCTGCGGCAACAAGCTCGACTGCAAACCGgtatgtgaag ... ctgcaagaagGATTGGGTGGGGCTACCGGCAGGAGTCAAGTTCGATCCGACGGACCAGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATCAGCAGCTCGGAGCTCATCGACGCCAAGCTCGAGGAACGCCGGATCTCCACGGCCAAGCACTGCCCCAGCTGCGGCAACAAGCTCGACTGCAAACCGgtatgtgaagagtgaagtgatcaacttcgttttgcctagctcttttcagtaattgcacacttgcacctcggtcggtagcgagggttcttgggcttcttgctgcctggtgcaaaacttgttcttatggaattaattggtgtaactgcaagaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT