1 5' 3' | 2 5' 3' | 3 5' 3' |
GATGAAGTTCATTTCTGCCTATCTGATGGCCTATCTGGCTGGCAACTCCAGCCCCACTGCGGAGGATTTGACAACGATTCTGGAGTCAGgtaatttcatctccctgatttatgtccatatttgaaactgttcagaaaatgtaatctagccaataaatctgcttaactggtgtctacattttcttctgct...
species | Oryza sativa |
transcript | LOC_Os01g09510.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGGCAACTCCAGCCCCACTGCGGAGGATTTGACAACGATTCTGGAGTCAG TTGGTTGTGAAATCGACAATGCAAAGATGGAACTCCTGTTGTNTCAAGTGAEST: gi|33821538|gb|CF336581.1|CF336581
genomic: TGGCAACTCCAGCCCCACTGCGGAGGATTTGACAACGATTCTGGAGTCAGgtaatttcat ... tttgtggcagTTGGTTGTGAAATCGACAATGCAAAGATGGAACTCCTGTTGTCTCAAGTGA
EST: TGGCAACTCCAGCCCCACTGCGGAGGATTTGACAACGATTCTGGAGTCAG TTGGTTGTGAAATCGACAATGCAAAGATGGAACTCCTGTTGTCTCAAGTGAEST: gi|33810146|gb|CF330962.1|CF330962
genomic: TGGCAACTCCAGCCCCACTGCGGAGGATTTGACAACGATTCTGGAGTCAGgtaatttcat ... tttgtggcagTTGGTTGTGAAATCGACAATGCAAAGATGGAACTCCTGTTGTCTCAAGTGA
EST: TGGCAACTCCAGCCCCACTGCGGAGGATTTGACAACGATTCTGGAGTCAG TTGGTTGTGAAATCGACAATGCAAAGATGGAACTCCTGTTGTCTCAAGTGAEST: gi|33662441|gb|CF293408.1|CF293408
genomic: TGGCAACTCCAGCCCCACTGCGGAGGATTTGACAACGATTCTGGAGTCAGgtaatttcat ... tttgtggcagTTGGTTGTGAAATCGACAATGCAAAGATGGAACTCCTGTTGTCTCAAGTGA
EST: TGGCAACTCCAGCCCCACTGCGGAGGATTTGACAACGATTCTGGAGTCAG TTGGTTGTGAAATCGACAACGCAAAGATGGAACTCCTGTTGTCTCAAGTGAEST: gi|33686251|gb|CF314490.1|CF314490
genomic: TGGCAACTCCAGCCCCACTGCGGAGGATTTGACAACGATTCTGGAGTCAGgtaatttcat ... tttgtggcagTTGGTTGTGAAATCGACAATGCAAAGATGGAACTCCTGTTGTCTCAAGTGA
EST: TGGCAACTCCAGCCCCACTGCGGAGGATTTGACAACGATTCTGGAGTCAG TTGGTTGTGAAATCGACAATGCAA-GATGGAACTCCTGTTGTCTCAAGTGAEST: gi|86897498|gb|CI294448.1|CI294448
genomic: TGGCAACTCCAGCCCCACTGCGGAGGATTTGACAACGATTCTGGAGTCAGgtaatttcat ... tttgtggcagTTGGTTGTGAAATCGACAATGCAAAGATGGAACTCCTGTTGTCTCAAGTGA
EST: TGGCAACTCCAGCCCCACTGCGGAGGATTTGACAACGATTCTGGAGTCAG TTGGTTGTGAAATCGACAATGCAAAGATGGAACTCCTGTTGTCTCAAGTGAEST: gi|7645997|gb|AU090561.1|AU090561
genomic: TGGCAACTCCAGCCCCACTGCGGAGGATTTGACAACGATTCTGGAGTCAGgtaatttcat ... tttgtggcagTTGGTTGTGAAATCGACAATGCAAAGATGGAACTCCTGTTGTCTCAAGTGA
EST: TGGCAACTCCAGCCCCACTGCGGAGGATTTGACAACGATTCTGGAGTCAG TTGGTTGTGAAATCGACAATGCAAAGATGGAACTCCTGTTGTCTCAAGTGA
genomic: TGGCAACTCCAGCCCCACTGCGGAGGATTTGACAACGATTCTGGAGTCAGgtaatttcat ... tttgtggcagTTGGTTGTGAAATCGACAATGCAAAGATGGAACTCCTGTTGTCTCAAGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGAAGTTCATTTCTGCCTATCTGATGGCCTATCTGGCTGGCAACTCCAGCCCCACTGCGGAGGATTTGACAACGATTCTGGAGTCAGgtaatttcatctccctgatttatgtccatatttgaaactgttcagaaaatgtaatctagccaataaatctgcttaactggtgtctacattttcttctgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catctccc