Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTTCTTGATACCAAGGCAAGTAGCTTATAAGAAGATTTGGACTTTGGTGGCATAAATGGATGAACTAACTGGCGGCTTCAACGTGGTGTTGATTACAGgtgcttttattgctaactggagcagtttgtgtagtttctttctttctctttgagaattctctcagtttcttgggcag

Basic information

species Oryza sativa
transcript LOC_Os01g08700.8
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g08700.8 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G107101_T05 (Zea mays), 5'ss of exon 2
-AGTTTCTT-GATACCAAGGCAAGTAGCTTATAAGAAGATTTGGACTTTGGTGGCATAAATGGATGAACTAACTGGCGGCTTCAACGTGGTGTTGATTACAGgtgcttttattgctaactggagcagtttgtgtagtttctttctttctctttgagaattctctcagtttcttgggcag
 ||| | |  ||| | || |  | |  ||||    |||| | || ||||||||||||| ||||||||||| | || |  |||||||  | ||||||||||||||||| |||||| | | |||| |  | |||||| ||| |||||||| ||||||||    |   ||||||||||||||
AAGTATGTCAGATTCAAATGTGAATGTCTTACT--AAGAGTAGGGCTTTGGTGGCATAGATGGATGAACTGATTGTCAACTTCAACAAGTTGTTGATTACAGgtgctcttattggttattggatcgctgtgtgtaatttgtttctttccctttgagagcctttctagtttcttgggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29642016|gb|CB647023.1|CB647023
EST:     GATGAACTAACTGGCGGCTTCAACGTGGTGTTGATTACAG                         GCTCTTGAGCTACCAAGTATGTCAGCTTCAAATGAGAAGTGGATTGATGGG
genomic: GATGAACTAACTGGCGGCTTCAACGTGGTGTTGATTACAGgtgcttttat ... tcttgggcagGCTCTTGAGCTACCAAGTATGTCAGCTTCAAATGAGAAGTGGATTGATGGG