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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGACGTGTACATCCATGATTATCTTTTGAAGAGGAACCTGCAGAGCACTGCCAAGGCATTCCAAGCAGAAGGCAGCGTGTCTTCCGATCCTGTTGgtcagtgcatcaatttctgaattttgtcatactactgtagtttgcaatctttgctctttctgcattaggaccagatagtttgttcctcagactgccattg...

Basic information

species Oryza sativa
transcript LOC_Os01g08190.5
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g08190.2 (Oryza sativa), 5'ss of exon 2
lower sequence: EFJ28239 (Selaginella moellendorffii), 5'ss of exon 2
GTTGGACGTGTACATCCATGATTATCTTTTGAAGAGGAACCTGCAGAGCACTGCCAAGGCATTCCAAGCAGAAGGCAGCGTGTCTTCCGATCCTGTTGgtcagtgcatcaatttctgaattttgtcatactactgtagtttgcaatctttgctctttctgcattaggaccagatagtttgttcctcagactgccattg
| |||||||||||||||||||||||||   |||||||||| |||||| | | || ||||| ||     | ||||| |  ||||| |||||||| || ||| |||   |||   |||  |||   |        || |||    | |  |   | |||||   || | ||    |||                      
GCTGGACGTGTACATCCATGATTATCTCACGAAGAGGAACTTGCAGAACTCGGCAAAGGCTTTTTTCACGGAAGGAAAAGTGTCGTCCGATCCCGTCGgtaagtttgtca---tctcgattgattggg-----tggagtcacgagtgatccttttttct---ttggaactttgtag----------------------

upper sequence: LOC_Os01g08190.2 (Oryza sativa), 5'ss of exon 2
lower sequence: EFJ29739 (Selaginella moellendorffii), 5'ss of exon 2
GTTGGACGTGTACATCCATGATTATCTTTTGAAGAGGAACCTGCAGAGCACTGCCAAGGCATTCCAAGCAGAAGGCAGCGTGTCTTCCGATCCTGTTGgtcagtgcatcaatttctgaattttgtcatactactgtagtttgcaatctttgctctttctgcattaggaccagatagtttgttcctcagactgccattg
| |||||||||||||||||||||||||   |||||||||| |||||| | | || ||||| ||     | ||||| |  ||||| |||||||| || ||| |||   |||   |||  |||   |     |  || |||    | |  |   | |||||   || | ||    |||                      
GCTGGACGTGTACATCCATGATTATCTCACGAAGAGGAACTTGCAGAACTCGGCAAAGGCTTTTTTCACGGAAGGAAAAGTGTCGTCCGATCCCGTCGgtaagtttgtca---tctcgattgatt-----tggtggagtcacgagtgatccttttttct---ttggaactttgtag----------------------