1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTCTTGCTTCTTTTGTTTGTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAGgtatcaataagcaacacctccactcattttttctcatcaatctcgtgttaattttctattctttactagaaaattatgttctttttttaccccttagttt...
species | Oryza sativa |
transcript | LOC_Os01g07360.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAG ATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCAEST: gi|88363375|gb|CI643233.1|CI643233
genomic: GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAGgtatcaataa ... gaatggtcagATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCA
EST: GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAG ATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCAEST: gi|88330175|gb|CI658480.1|CI658480
genomic: GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAGgtatcaataa ... gaatggtcagATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCA
EST: GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAG ATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCAEST: gi|88324875|gb|CI644884.1|CI644884
genomic: GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAGgtatcaataa ... gaatggtcagATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCA
EST: GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAG ATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCAEST: gi|88324856|gb|CI644864.1|CI644864
genomic: GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAGgtatcaataa ... gaatggtcagATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCA
EST: GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAG ATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCAEST: gi|88376912|gb|CI639237.1|CI639237
genomic: GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAGgtatcaataa ... gaatggtcagATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCA
EST: GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAG ATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCAEST: gi|88342892|gb|CI640225.1|CI640225
genomic: GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAGgtatcaataa ... gaatggtcagATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCA
EST: GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAG ATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCAEST: gi|88338642|gb|CI644099.1|CI644099
genomic: GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAGgtatcaataa ... gaatggtcagATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCA
EST: GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAG ATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCAEST: gi|88348195|gb|CI637656.1|CI637656
genomic: GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAGgtatcaataa ... gaatggtcagATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCA
EST: GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAG ATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCAEST: gi|88302800|gb|CI668646.1|CI668646
genomic: GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAGgtatcaataa ... gaatggtcagATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCA
EST: GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAG ATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCAEST: gi|88381557|gb|CI682215.1|CI682215
genomic: GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAGgtatcaataa ... gaatggtcagATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCA
EST: GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAG ATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCA
genomic: GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAGgtatcaataa ... gaatggtcagATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTTGCTTCTTTTGTTTGTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAGgtatcaataagcaacacctccactcattttttctcatcaatctcgtgttaattttctattctttactagaaaattatgttctttttttaccccttagttt
- - - - - - - - - - - - - - - - - - - - - - - - GATGGA