Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTGCTTCTTTTGTTTGTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAGgtatcaataagcaacacctccactcattttttctcatcaatctcgtgttaattttctattctttactagaaaattatgttctttttttaccccttagttt...

Basic information

species Oryza sativa
transcript LOC_Os01g07360.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88335762|gb|CI647118.1|CI647118
EST:     GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAG                         ATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCA
genomic: GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAGgtatcaataa ... gaatggtcagATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCA
EST: gi|88363375|gb|CI643233.1|CI643233
EST:     GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAG                         ATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCA
genomic: GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAGgtatcaataa ... gaatggtcagATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCA
EST: gi|88330175|gb|CI658480.1|CI658480
EST:     GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAG                         ATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCA
genomic: GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAGgtatcaataa ... gaatggtcagATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCA
EST: gi|88324875|gb|CI644884.1|CI644884
EST:     GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAG                         ATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCA
genomic: GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAGgtatcaataa ... gaatggtcagATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCA
EST: gi|88324856|gb|CI644864.1|CI644864
EST:     GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAG                         ATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCA
genomic: GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAGgtatcaataa ... gaatggtcagATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCA
EST: gi|88376912|gb|CI639237.1|CI639237
EST:     GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAG                         ATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCA
genomic: GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAGgtatcaataa ... gaatggtcagATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCA
EST: gi|88342892|gb|CI640225.1|CI640225
EST:     GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAG                         ATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCA
genomic: GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAGgtatcaataa ... gaatggtcagATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCA
EST: gi|88338642|gb|CI644099.1|CI644099
EST:     GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAG                         ATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCA
genomic: GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAGgtatcaataa ... gaatggtcagATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCA
EST: gi|88348195|gb|CI637656.1|CI637656
EST:     GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAG                         ATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCA
genomic: GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAGgtatcaataa ... gaatggtcagATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCA
EST: gi|88302800|gb|CI668646.1|CI668646
EST:     GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAG                         ATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCA
genomic: GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAGgtatcaataa ... gaatggtcagATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCA
EST: gi|88381557|gb|CI682215.1|CI682215
EST:     GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAG                         ATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCA
genomic: GTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAGgtatcaataa ... gaatggtcagATTTGGTCTTCGTCATGAACAGAAGCTGAGATCTTTGGTGCAGGATCCTCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCTTGCTTCTTTTGTTTGTATGTTAACATCTTGTCCGTAACTCTGATGATGGAAAAGTTTTCAGAAGgtatcaataagcaacacctccactcattttttctcatcaatctcgtgttaattttctattctttactagaaaattatgttctttttttaccccttagttt

- - - - - - - - - - - - - - - - - - - - - - - - GATGGA