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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCTGGGGACGGTGGGGGCGCTCAGCCTCTCGGTGGTGTCCTCGGTCTCCATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatccaatcttgtctcaagatgctttagcttcactagtacttggcagtggctgttttgttggatgcttgtgctagatgtatagcttgtgtattg...

Basic information

species Oryza sativa
transcript LOC_Os01g07310.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g07310.4 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G116053_T01 (Zea mays), 5'ss of exon 2
CAGCTGGGGACGGTGGGGGCGCTCAGCCTCTCGGTGGTGTCCTCGGTCTCCATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatccaatcttgtctcaagatgctttagcttcactagtacttggcagtggctgttttgttggatgcttgtgctagatgtata-gcttgtgtattg--
|||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||| | | ||||||  |  ||  |   | |  ||    | |      |  ||||||| ||||  |||| |   || || |  |   
CAGCTGGGGACGGTGGGGGCACTCAGCCTCTCGGTGGTGTCCTCCGTCTCCATCGTCATCTGCAACAAGGCTCTCATGAGCTCCCTTGGCTTCAACTTCGgtatgagatccgatcttgtc-cgacatgctt--ggctcctttccattcagctactgtttggccctcagatgcttctgcttcatgtttgtactcgtatggtagc

upper sequence: LOC_Os01g07310.4 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G081848_T05 (Zea mays), 5'ss of exon 2
CAGCTGGGGACGGTGGGGGCGCTCAGCCTCTCGGTGGTGTCCTCGGTCTCCATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatccaatcttgtctcaagatgctttagcttcactagtacttggcagt--ggctgttttgttggatgcttgtgctagatgtatagcttg-tgtattg-----
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||   | || |||       ||  | |   ||| |  |||||  |  |    || || |  ||| || |||| | | |   |  || ||    |     
CAGCTGGGGACGGTGGGGGCGCTCAGCCTCTCGGTGGTGTCCTCCGTCTCCATCGTCATCTGCAACAAGGCTCTCATGAGCTCCCTCCGCTTCAACTTTGgtatgagatccg--cctggctcc-----tttccgttctgctactgtttggctcttagatgcttctgctccatgtttttgctcg-tatgctgtctgctgaggcgcgagg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29629268|gb|CB634279.1|CB634279
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|88404615|gb|CI581051.1|CI581051
EST:     CATGGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGTTTCCACTTCG                         CCACTACTTTGACAAGCTGGGATCTCCT-GTTA
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTA
EST: gi|88404240|gb|CI575728.1|CI575728
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCAGG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|58588563|gb|CF986871.1|CF986871
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|88389475|gb|CI600644.1|CI600644
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         ACACTACTTTGACAAGCTGGCATCTCCTC
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTC
EST: gi|88407697|gb|CI607831.1|CI607831
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTG
EST: gi|58657641|gb|CK046321.1|CK046321
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|88425263|gb|CI564780.1|CI564780
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|8857939|gb|AU095257.1|AU095257
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGGACAAGCTGGGCATCTCCTCGTTACATTTTGCTCTCTTCA
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTG-ACAAGCTGG-CATCTCCTCGTTACATTTTGCTCTCTTCA
EST: gi|88362325|gb|CI608716.1|CI608716
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGGTCTCTTCAGG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|88423736|gb|CI617088.1|CI617088
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAG
EST: gi|88423801|gb|CI609832.1|CI609832
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|3061098|gb|C91730.1|C91730
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         C-ACTACTTTGACAAGCTGGCATCTCCTCGT
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGT
EST: gi|88406984|gb|CI578512.1|CI578512
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCATTACTTTGACAAGCT
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCT
EST: gi|88426166|gb|CI574049.1|CI574049
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTC
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTC
EST: gi|58606825|gb|CK034858.1|CK034858
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|88312159|gb|CI582497.1|CI582497
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCA
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCA
EST: gi|86876961|gb|CI309749.1|CI309749
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|86850723|gb|CI309535.1|CI309535
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|44678003|gb|CR291437.1|CR291437
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|88401466|gb|CI586022.1|CI586022
EST:     -ATTGTCATCTGCAACAAGGCCCTCATGAGCTCC-TCGGCTTCAACTTCG                         CCACTACTTTGATAAGCTGGCATCT
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCT
EST: gi|88735366|gb|CI758874.1|CI758874
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTAATTTGACAAGCTGGGATTTCCTCGTTACA
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACA
EST: gi|58656550|gb|CK045230.1|CK045230
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|58586232|gb|CF984540.1|CF984540
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|58593927|gb|CF992235.1|CF992235
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACATTTTGCTCTCTTCACG
EST: gi|702015|gb|D48306.1|D48306
EST:     CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCG                         CCACTACTTTGACAAGCTGGCATCTCCTCGTTACAATTTTGCTCTCTTCAC
genomic: CATTGTCATCTGCAACAAGGCCCTCATGAGCTCCCTCGGCTTCAACTTCGgtatgagatc ... tgttttgcagCCACTACTTTGACAAGCTGGCATCTCCTCGTTACA-TTTTGCTCTCTTCAC