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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGACTTGCTACATCACCCCCCTTCTCGGTGCCTTCTTGGCTGATGCCTACATGGGCAGGTTCTGGACCATTGCCAGCTTCATGATCATCTACATCCTGgtaactaatcgtcttggatttcagtttctgattgctatgatcgatggtgtgatcgaagagagagatgttttgatggttgcag

Basic information

species Oryza sativa
transcript LOC_Os01g04950.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g04950.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G020484_T08 (Zea mays), 5'ss of exon 3
GGGGACTTGCTACATCACCCCCCTTCTCGGTGCCTTCTTGGCTGATGCCTACATGGGCAGGTTCTGGACCATTGCCAGCTTCATGATCATCTACATCCTGgtaactaatcgtc--ttggatttcagtttctgattgctatgatcgatggtgtgatcgaagagagagatgttttgatggttgcag-------------
 ||||| ||||||||||| || ||  |||| |||||||| || || || |||||||| |||||||||||||| |||| ||||||||||||||||||  | ||||   ||||||  | | ||  ||   ||  ||||| ||       || |    |       | ||      ||| |   ||              
AGGGACGTGCTACATCACGCCGCTCATCGGCGCCTTCTTCGCCGACGCGTACATGGGGAGGTTCTGGACCATCGCCATCTTCATGATCATCTACATTTTCgtaa--gatcgtcgctcgaatccca---tcccattgccatccgacgaggagaagacaccacctgtgactgacggatcgactcaactgaactgaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29631591|gb|CB636600.1|CB636600
EST:     ACATGGGCAGGTTCTGGACCATTGCCAGCTTCATGATCATCTACATCCTG                         GGTTTGGCGTTGCTGACAATGGCGTCGTCGGTGAAGGGGCTGGTGCCGGCG
genomic: ACATGGGCAGGTTCTGGACCATTGCCAGCTTCATGATCATCTACATCCTGgtaactaatc ... atggttgcagGGTTTGGCGTTGCTGACAATGGCGTCGTCGGTGAAGGGGCTGGTGCCGGCG
EST: gi|58690132|gb|CK078819.1|CK078819
EST:     ACATGGGCAGGTTCTGGACCATTGCCAGCTTCATGATCATCTACATCCTG                         GGTTTGGCGTTGCTGACAATGGCGTCGTCGGTGAAGGGGCTGGTGCCGGCG
genomic: ACATGGGCAGGTTCTGGACCATTGCCAGCTTCATGATCATCTACATCCTGgtaactaatc ... atggttgcagGGTTTGGCGTTGCTGACAATGGCGTCGTCGGTGAAGGGGCTGGTGCCGGCG
EST: gi|58664808|gb|CK053494.1|CK053494
EST:     ACATGGGCAGGTTCTGGACCATTGCCAGCTTCATGATCATCTACATCCTG                         GGTTTGGCGTTGCTGACAATGGCGTCGTCGGTGAAGGGGCTGGTGCCGGCG
genomic: ACATGGGCAGGTTCTGGACCATTGCCAGCTTCATGATCATCTACATCCTGgtaactaatc ... atggttgcagGGTTTGGCGTTGCTGACAATGGCGTCGTCGGTGAAGGGGCTGGTGCCGGCG
EST: gi|29661642|gb|CB657917.1|CB657917
EST:     ACATGGGCAGGTTCTGGACCATTGCCAGCTTCATGATCATCTACATCCTG                         GGTTTGGCGTTGCTGACAATGGCGTCGTCGGTGAAGGGGCTGGTGCCGGCG
genomic: ACATGGGCAGGTTCTGGACCATTGCCAGCTTCATGATCATCTACATCCTGgtaactaatc ... atggttgcagGGTTTGGCGTTGCTGACAATGGCGTCGTCGGTGAAGGGGCTGGTGCCGGCG