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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACATCTCTGGGTACAAGAACCGGTTTCAGAACTTCATCAAGCACTTGCGCGAAATGGGGGATGAGgtaaattcagcaaaaagctagaaatgttgaaaattataggttgctagtttgtgacttcattttgtacatgtcttgtgcgtgcag

Basic information

species Oryza sativa
transcript LOC_Os01g04920.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g04920.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G477503_T01 (Zea mays), 5'ss of exon 2
TTACATCTCTGGGTACAAGAACCGGTTTCAGAACTTCATCAAGCACTTGCGCGAAATGGGGGATGAGgtaaat--tcagcaaaaagctagaaatgttgaaaattataggttg-----ctagtttgtgac--ttcattttgtacatgtcttgtgcgtgcag
 |||||||||||||| ||||||||||| |||||||||||||| || ||||| ||||||||||| |||||   |  |   |    |  | | || || || | |    ||         ||||| ||| |  || |||| ||  | ||  | | | | |||
ATACATCTCTGGGTATAAGAACCGGTTCCAGAACTTCATCAAACATTTGCGAGAAATGGGGGACGAGgtgcgtgttttactgtcatttggtaaggtcgatattagaggggcagcagattagttggtgtcgattaatttggttta-gttgtattc-ttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58684663|gb|CK073350.1|CK073350
EST:     AGAACCGGTTTCAGAACTTCATCAAGCACTTGCGCGAAATGGGGGATGAG                         GTGATTGTTGTGACCAACCATGAGGGGGTTCCCCAAGAATTCCATGGTGCC
genomic: AGAACCGGTTTCAGAACTTCATCAAGCACTTGCGCGAAATGGGGGATGAGgtaaattcag ... gtgcgtgcagGTGATTGTTGTGACCAACCATGAGGGGGTTCCCCAAGAATTCCATGGTGCC
EST: gi|58668243|gb|CK056929.1|CK056929
EST:     AGAACCGGTTTCAGAACTTCATCAAGCACTTGCGCGAAATGGGGGATGAG                         GTGATTGTTGTGACCAACCATGAGGGGGTTCCCCAAGAATTCCATGGTGCC
genomic: AGAACCGGTTTCAGAACTTCATCAAGCACTTGCGCGAAATGGGGGATGAGgtaaattcag ... gtgcgtgcagGTGATTGTTGTGACCAACCATGAGGGGGTTCCCCAAGAATTCCATGGTGCC
EST: gi|4715717|gb|AU056833.1|AU056833
EST:     AGAACCGGTTTCAGAACTTCATCAAGCACTTGCGCGAAATGGGGGATGAG                         GTGATTGTTGTGACCAACCATGAGGGGGTTCCCCAAGAATTCCATGGTGCC
genomic: AGAACCGGTTTCAGAACTTCATCAAGCACTTGCGCGAAATGGGGGATGAGgtaaattcag ... gtgcgtgcagGTGATTGTTGTGACCAACCATGAGGGGGTTCCCCAAGAATTCCATGGTGCC