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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAGTGTGAAGCTTGTGCCAGTAGTAGGACGGCCGATCCTGTGCGGGCTTGAGAATTATGCAATGGTGCCACTTGAGACGAGGACAGTGCCAAATCAAGgtgacatggtttgaagattgcgctctcagccgagaaaattggagaccagcaaaaatttcctcttgtacattctctaagcttgttttttattcatcttggcag

Basic information

species Oryza sativa
transcript LOC_Os01g04720.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g04720.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G022897_T01 (Zea mays), 5'ss of exon 2
ATGAGTGTGAAGCTTGTGCCAGTAGTAGGACGGCCGATCCTGTGCGGGCTTGAGAATTATGCAATGGTGCCACTTGAGACGAGGACAGTGCCAAATCAAGgtgacatggtttgaagattgcgctctcagccg---agaaaattggagaccagcaaaaatttcctcttgtacatt-----ctctaagcttgttttttattcatcttggcag
 |||| || | |||||||||||| || ||||||||||| |||||||| |||||||||||||| |||||||||||||||| |||||||||||| |  ||||||||     | ||||||||     ||   | |   |  | ||| |   ||  ||||| |  || ||  ||| |      |||| ||||  | ||  |||  | || ||||
TTGAGCGTCAGGCTTGTGCCAGTGGTGGGACGGCCGATTCTGTGCGGCCTTGAGAATTATGCGATGGTGCCACTTGAGATGAGGACAGTGCCGAGCCAAGgtgatcaattctgaagatttttggctggactgctcaatatattaggagcctacaaaattgccccctactacctctgcccctctcagct--tcttgcattggtttttgcag