1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTCAGTGGAAACCCGGGGAATTTGTACTGACTTGGGGCACAGGTTCGCATCCATCTGCGGTGATTTTGTTCTGCAGTCCTCAATGCGTGGAGAGAATACGgtgagaccaatgagctctttgcattctgttcaactcttgactgctctgatgtgctttgcaaaaggatgttcgatttgacagatgtatagtactctttaca...
species | Oryza sativa |
transcript | LOC_Os01g04660.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCATCTGCGGTGATTTTGTTCTGCAGTCCTCAATGCGTGGAGAGAATACG GATGGGAGGAGGGAGGTTCAGCTGGGCCCTCACACGATTCAGACACATGGAEST: gi|88587743|gb|CI704456.1|CI704456
genomic: CCATCTGCGGTGATTTTGTTCTGCAGTCCTCAATGCGTGGAGAGAATACGgtgagaccaa ... ttttcaacagGATGGGAGGAGGGAGGTTCAGCTGGGCCCTCACACGATTCAGACACATGGA
EST: CCATCTGCGGTGATTTTGTTCTGCAGTCCTCAATGCGTGGAGAGAATACG GATGGGAGGAGGGAGGTTCAGCTGGGCCCTCACACGATTCAGACACATGGAEST: gi|88580267|gb|CI697181.1|CI697181
genomic: CCATCTGCGGTGATTTTGTTCTGCAGTCCTCAATGCGTGGAGAGAATACGgtgagaccaa ... ttttcaacagGATGGGAGGAGGGAGGTTCAGCTGGGCCCTCACACGATTCAGACACATGGA
EST: CCATCTGCGGTGATTTTGTTCTGCAGTCCTCAATGCGTGGAGAGAATACG GATGGGAGGAGGGAGGTTCAGCTGGGCCCTCACACGATTCAGACACATGGAEST: gi|218479708|gb|FG950881.1|FG950881
genomic: CCATCTGCGGTGATTTTGTTCTGCAGTCCTCAATGCGTGGAGAGAATACGgtgagaccaa ... ttttcaacagGATGGGAGGAGGGAGGTTCAGCTGGGCCCTCACACGATTCAGACACATGGA
EST: CCATCTGCGGTGATTTTGTTCTGCAGTCCTCAATGCGTGGAGAGAATACG GATGGGAGGAGGGAGGTTCAGCTGGGCCCTCACACGATTCAGACACATGGA
genomic: CCATCTGCGGTGATTTTGTTCTGCAGTCCTCAATGCGTGGAGAGAATACGgtgagaccaa ... ttttcaacagGATGGGAGGAGGGAGGTTCAGCTGGGCCCTCACACGATTCAGACACATGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCAGTGGAAACCCGGGGAATTTGTACTGACTTGGGGCACAGGTTCGCATCCATCTGCGGTGATTTTGTTCTGCAGTCCTCAATGCGTGGAGAGAATACGgtgagaccaatgagctctttgcattctgttcaactcttgactgctctgatgtgctttgcaaaaggatgttcgatttgacagatgtatagtactctttaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA