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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACCTATGCATCGACCAACAATAACCCAGGTTTTAGATATGTTCGAGAGAGGTTTGGATGAACTGGAAATGCCACCAAAACAAAATTTCAGTGAATTACTgtaagacactttctctacacatttttatgtggactggtaatattttcagtgaagttcatctatgctatttctgtttttcag

Basic information

species Oryza sativa
transcript LOC_Os01g04550.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29672759|gb|CB669034.1|CB669034
EST:     GGTTTGGATGAACTGGAAATGCCACCAAAACAAAATTTCAGTGAATTACT                         AGACCATTCAGTTCATGAGCTGAATACAGAAAGTAAGAGTTCTACTGGAAA
genomic: GGTTTGGATGAACTGGAAATGCCACCAAAACAAAATTTCAGTGAATTACTgtaagacact ... tgtttttcagAGACCATTCAGTTCATGAGCTGAATACAGAAAGTAAGAGTTCTACTGGAAA
EST: gi|86833601|gb|CI337175.1|CI337175
EST:     GGTTTGGATGAACTGGAAATGCCACCAAAACAAAATTTCAGTGAATTACT                         AGACCATTCAGTTCATGAGCTGAATACAGAAAGTAAGAGTTCTACTGGAAA
genomic: GGTTTGGATGAACTGGAAATGCCACCAAAACAAAATTTCAGTGAATTACTgtaagacact ... tgtttttcagAGACCATTCAGTTCATGAGCTGAATACAGAAAGTAAGAGTTCTACTGGAAA
EST: gi|29628474|gb|CB633485.1|CB633485
EST:     GGTTTGGATGAACTGGAAATGCCACCAAAACAAAATTTCAGTGAATTACT                         AGACCATTCAGTTCATGAGCTGAATACAGAAAGTAAGAGTTCTACTGGAAA
genomic: GGTTTGGATGAACTGGAAATGCCACCAAAACAAAATTTCAGTGAATTACTgtaagacact ... tgtttttcagAGACCATTCAGTTCATGAGCTGAATACAGAAAGTAAGAGTTCTACTGGAAA