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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGATGGCGGCGGGGCCGCAGCCGCAGGGCGGCGTCTCGGGGCTCTTCCGCGGCCCGCGCTCGAGCCCGCGCTACTCCCGCGTGCGCGCCACCGCCACAGgtgcgtcctccctcgtcaccgattgattgggggtggcagtgagcttttggttgttgggatggcgtggtagggtgattcggttttaggagagaggatcaat...

Basic information

species Oryza sativa
transcript LOC_Os01g04190.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88738909|gb|CI762417.1|CI762417
EST:     CGGCCCGCGCTCGAGCCCGCGCTACTCCCGCGTGCGCGCCACCGCCACAG                         TTGATCCTGAGGATATTCCATTGGAGAAGGTTCAAGCTAAATCTTCTGGAA
genomic: CGGCCCGCGCTCGAGCCCGCGCTACTCCCGCGTGCGCGCCACCGCCACAGgtgcgtcctc ... ttatttccagTTGATCCTGAGGATATTCCATTGGAGAAGGTTCAAGCTAAATCTTCTGGAA
EST: gi|88385512|gb|CI564172.1|CI564172
EST:     CGGCCCGCGCTCGAGCCCGCGCTACTCCCGCGTGCGCGCCACCGCCACAG                         TTGATCCTGAGGATATTCCATTGGAGAAGGTTCAAGCTAAATCTTCTGGAA
genomic: CGGCCCGCGCTCGAGCCCGCGCTACTCCCGCGTGCGCGCCACCGCCACAGgtgcgtcctc ... ttatttccagTTGATCCTGAGGATATTCCATTGGAGAAGGTTCAAGCTAAATCTTCTGGAA
EST: gi|86849748|gb|CI301637.1|CI301637
EST:     CGGCCCGCGCTCGAGCCCGCGCTACTCCCGCGTGCGCGCCACCGCCACAG                         TTGATCCTGAGGATATTCCATTGGAGAAGGTTCAAGCTAAATCTTCTGGAA
genomic: CGGCCCGCGCTCGAGCCCGCGCTACTCCCGCGTGCGCGCCACCGCCACAGgtgcgtcctc ... ttatttccagTTGATCCTGAGGATATTCCATTGGAGAAGGTTCAAGCTAAATCTTCTGGAA
EST: gi|88368202|gb|CI575084.1|CI575084
EST:     CGGCCCGCGCTCGAGCCCGCGCTACTCCCGCGTGCGCGCCACCGCCACAG                         TTGATCCTGAGGATATTCCATTGGAGAAGGTTCAAGCTAAATCTTCTGGAA
genomic: CGGCCCGCGCTCGAGCCCGCGCTACTCCCGCGTGCGCGCCACCGCCACAGgtgcgtcctc ... ttatttccagTTGATCCTGAGGATATTCCATTGGAGAAGGTTCAAGCTAAATCTTCTGGAA
EST: gi|88745134|gb|CI768494.1|CI768494
EST:     GGCCCGCGCTCGAGCCCGCGCTACTCCCGCGGTGCGCGCCACCGCCACAG                         TTGATCCTGAGGATATTCCATTGGAGAAGGTTCAAGCTAAATCTTCTGGAA
genomic: GGCCCGCGCTCGAGCCCGCGCTACTCCCGCG-TGCGCGCCACCGCCACAGgtgcgtcctc ... ttatttccagTTGATCCTGAGGATATTCCATTGGAGAAGGTTCAAGCTAAATCTTCTGGAA
EST: gi|86832143|gb|CI305369.1|CI305369
EST:     CGGCCCGCGCTCGAGCCCGCGCTACTCCCGCGTGCGCGCCACCGCCACAG                         TTGATCCTGAGGATATTCCATTGGAGAAGGTTCAAGCTAAATCTTCTGGAA
genomic: CGGCCCGCGCTCGAGCCCGCGCTACTCCCGCGTGCGCGCCACCGCCACAGgtgcgtcctc ... ttatttccagTTGATCCTGAGGATATTCCATTGGAGAAGGTTCAAGCTAAATCTTCTGGAA
EST: gi|88732120|gb|CI757297.1|CI757297
EST:     CGGCCCGCGCTCGAGCCCGCGCTACTCCCGCGTGCGCCCCACCGCCACAG                         TTGATCCTGAGGATATTCCATTGGAGAAGGTTCAAGCTAAATCTTCTGGAA
genomic: CGGCCCGCGCTCGAGCCCGCGCTACTCCCGCGTGCGCGCCACCGCCACAGgtgcgtcctc ... ttatttccagTTGATCCTGAGGATATTCCATTGGAGAAGGTTCAAGCTAAATCTTCTGGAA
EST: gi|300215629|gb|HO088255.1|HO088255
EST:     CGCGCTACT-CCGCGTGCGCGCCACCGCCACAG                         TTGATCCTGAGGATATTCCCTTGTTAGAAGGTTCAAGCTAAATCTTCTGGA
genomic: CGCGCTACTCCCGCGTGCGCGCCACCGCCACAGgtgcgtcctc ... ttatttccagTTGATCCTGAGGATATTCCATTG-GAGAAGGTTCAAGCTAAATCTTCTGGA
EST: gi|88740564|gb|CI764072.1|CI764072
EST:     CGGCCCGCGCTCGAGCCCGCGCTACTCCCGCGTGCGCGCCACCGCCACAG                         TTGATCCTGAGGATATTCCATTGGAGAAGGTTCAAGCTAAATCTTCTGGAA
genomic: CGGCCCGCGCTCGAGCCCGCGCTACTCCCGCGTGCGCGCCACCGCCACAGgtgcgtcctc ... ttatttccagTTGATCCTGAGGATATTCCATTGGAGAAGGTTCAAGCTAAATCTTCTGGAA