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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACATGACGACGATCGTCGTCAAGTTCTTCATGGTCGACAGCGGCAAGCCGTACCCGTTCGACGCCACGGCCGAGCCCGGCTACGTCTATCACTGCCACgtaagcatcgacacttaattaactttctctgccacttaataatgtcttaattactattccctccatcccaaattataaggtctatattttttttacatgg...

Basic information

species Oryza sativa
transcript LOC_Os01g03530.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g03530.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G086727_T01 (Zea mays), 5'ss of exon 2
GTACATGACGACGATCGTCGTCAAGTTCTTCATGGTCGACAGCGGCAAGCCGTACCCGTTCGACGCCACGGCCGAGCCCGGCTACGTCTATCACTGCCACgtaagcatc-gacac---ttaattaactttctctgccacttaataatgtctt--aattactattccctccatcccaaattataaggtctatattttttttacatgg-----------
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GTTCATGACCACGGTGGTCGTCAAGTTCCTCATGGTAGACACCGGCAGGAGCTACCCGTTCGACGCCACGGCCGAGCCAGGATACGTCTACCATTGCCACgtacgtaactgacacaagttgacgcatgatacatgtta-ttactactgctctgaaacatctgcttatttcattgcttattaccaactgattgtgaatgctaattggctgtttggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88409277|gb|CI559375.1|CI559375
EST:     CGTACCCGTTCGACGCCACGGCCGAGCCCGGCTACGTCTATCACTGCCAC                         ATTCTGGATCATGAGGACAACGCCATGATTCGCCCGCTAAAGCTGATCAAA
genomic: CGTACCCGTTCGACGCCACGGCCGAGCCCGGCTACGTCTATCACTGCCACgtaagcatcg ... ttggttgcagATTCTGGATCATGAGGACAACGCCATGATTCGCCCGCTAAAGCTGATCAAA
EST: gi|89163572|gb|CI100462.1|CI100462
EST:     CGTACCCGTTCGACGCCACGGCCGAGCCAGGGTACGTCTATGACTGCCAC                         ATTCTGGGTCATGAGGACAACGCCATGATTCGCCCGCTAAAGCTGATCAAA
genomic: CGTACCCGTTCGACGCCACGGCCGAGCCCGGCTACGTCTATCACTGCCACgtaagcatcg ... ttggttgcagATTCTGGATCATGAGGACAACGCCATGATTCGCCCGCTAAAGCTGATCAAA
EST: gi|88456565|gb|CI547281.1|CI547281
EST:     CCCGGCTACGTCTATCACTGCCAC                         ATTCTGGATCATGAGGACAACGCCATGATTCGCCCGCTAAAGCTGATCAAA
genomic: CCCGGCTACGTCTATCACTGCCACgtaagcatcg ... ttggttgcagATTCTGGATCATGAGGACAACGCCATGATTCGCCCGCTAAAGCTGATCAAA
EST: gi|88249151|gb|CI249000.1|CI249000
EST:     CGTACCCGTTCGACGCCACGGCCGAGCCCGGCTACGTCTATCACTGCCAC                         ATTCTGGATCATGAGGACAACGCCATGATTCGCCCGCTAAAGCTGATCAAA
genomic: CGTACCCGTTCGACGCCACGGCCGAGCCCGGCTACGTCTATCACTGCCACgtaagcatcg ... ttggttgcagATTCTGGATCATGAGGACAACGCCATGATTCGCCCGCTAAAGCTGATCAAA
EST: gi|88383134|gb|CI538162.1|CI538162
EST:     GGCCGAGCCCGGGTACGTCTATCACTGCCAC                         ATTCTGGATCATGAGGACAACGCCATGATTCGCCCGCTAAAGCTGATCAAA
genomic: GGCCGAGCCCGGCTACGTCTATCACTGCCACgtaagcatcg ... ttggttgcagATTCTGGATCATGAGGACAACGCCATGATTCGCCCGCTAAAGCTGATCAAA
EST: gi|88232947|gb|CI232796.1|CI232796
EST:     CGTACCCGTTCGACGCCACGGCCGAGCCCGGCTACGTCTATCACTGCCAC                         ATTCTGGATCATGAGGACAACGCCATGATTCGCCCGCTAAAACTGATCAAA
genomic: CGTACCCGTTCGACGCCACGGCCGAGCCCGGCTACGTCTATCACTGCCACgtaagcatcg ... ttggttgcagATTCTGGATCATGAGGACAACGCCATGATTCGCCCGCTAAAGCTGATCAAA
EST: gi|88246331|gb|CI246180.1|CI246180
EST:     CGTACCCGTTCGACGCCACGGCCGAGCCCGGCTACGTCTATCACTGCCAC                         ATTCTGGATCATGAGGACAACGCCATGATTCGCCCGCTAAAGCTGATCAAA
genomic: CGTACCCGTTCGACGCCACGGCCGAGCCCGGCTACGTCTATCACTGCCACgtaagcatcg ... ttggttgcagATTCTGGATCATGAGGACAACGCCATGATTCGCCCGCTAAAGCTGATCAAA