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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCATGGCCTGGTCGAGCCGTTGTTGAACCTGGGAGGAGGTCATGGGATGGCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaacatcaagatctaagattaacggatggaaattaatactccataccttttttatatctgtcagttgtgctagtacatcaatgtttggtcaat...

Basic information

species Oryza sativa
transcript LOC_Os01g01710.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g01710.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G036290_T02 (Zea mays), 5'ss of exon 2
AGCATGGCCTGGTCGAGCCGTTGTTGAACCTGGGAGGAGGTCATGGGATGGCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaacatcaagatctaagattaacggatggaaattaatactccataccttt--tttatatctgt-cagttgtgctagta-catcaatgtttggtcaat----------------------------------------------------------------------------------------
 ||||||||||| ||||| |||| ||| |||||  ||||||||| ||||||||| |||||||| || |||||||| || || ||||| || || ||||||||||   ||       |||| |||| | | ||||| || ||   | |||||| | ||  ||  || |||| ||||  | |   ||   |   |  ||| |  ||                                                                                        
GGCATGGCCTGGGCGAGCTGTTGCTGAGCCTGGCCGGAGGTCATTGGATGGCCCAAAGCCTATATCGATTGTTGGATCCACTGGTTCCATAGGAACACAGgtaacgcgatt-----gatcgaagactcatggatgaaatttgtcattccataacattgcttgttacctgtgcagtactacacttaatgttggtagttgatagatcaaactttagattattggtgcacaatcatctgtttggaaccagtaaaattggtatattttgcatgctacattagaattttgcatgcag

upper sequence: LOC_Os01g01710.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G036290_T01 (Zea mays), 5'ss of exon 2
AGCATGGCCTGGTCGAGCCGTTGTTGAACCTGGGAGGAGGTCATGGGATGGCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaacatcaagatctaagattaacggatggaaattaatactccataccttt--tttatatctgt-cagttgtgctagta-catcaatgtttggtcaat-
 ||||||||||| ||||| |||| ||| |||||  ||||||||| ||||||||| |||||||| || |||||||| || || ||||| || || ||||||||||   ||       |||| |||| | | ||||| || ||   | |||||| | ||  ||  || |||| ||||  | |   ||   |   |  ||| |  || 
GGCATGGCCTGGGCGAGCTGTTGCTGAGCCTGGCCGGAGGTCATTGGATGGCCCAAAGCCTATATCGATTGTTGGATCCACTGGTTCCATAGGAACACAGgtaacgcgatt-----gatcgaagactcatggatgaaatttgtcattccataacattgcttgttacctgtgcagtactacacttaatgttggtagttgatagatc

upper sequence: LOC_Os01g01710.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G056975_T02 (Zea mays), 5'ss of exon 2
AGCATGGCCTGGTCGAGCCGTTGTTGAACCTGGGAGGAGGTCATGGGATGGCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaacatcaagatctaagattaacggatggaaattaatactccataccttttttatatctgtcagttgtg--ctagtacatcaatgtttggtcaat---
|||||||||||| ||||| |||| ||| |||||  ||||||||||||||||||| ||||||||||| |||||||| ||||| ||||| || || ||||||||||| |||        ||| || | | | | ||| || ||   | |||||| | ||  || |||   |  | | |   | || | |     | || |       
AGCATGGCCTGGGCGAGCTGTTGCTGAGCCTGGCCGGAGGTCATGGGATGGCCCAAAGCCTATCTCGATTGTTGGTTCAACTGGTTCCATAGGAACACAGgtaaagggattt-----atcgaatactcatgtatgaaatttgtcagtccataacgttgatagatcaaactatagcgaattggtgcttatgcatctgtttggaacc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38474648|gb|CF958781.1|CF958781
EST:     GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAG                         ACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
genomic: GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaa ... aactaaaaagACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
EST: gi|58607529|gb|CK035562.1|CK035562
EST:     GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAG                         ACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
genomic: GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaa ... aactaaaaagACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
EST: gi|88415185|gb|CI584008.1|CI584008
EST:     GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAG                         ACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
genomic: GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaa ... aactaaaaagACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
EST: gi|88372416|gb|CI619746.1|CI619746
EST:     GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAG                         ACATTGGACATAGTTGCGGAGAATGCAGATAAATTCCGGGTTGTTGGTCTT
genomic: GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaa ... aactaaaaagACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
EST: gi|88314339|gb|CI604823.1|CI604823
EST:     GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAG                         ACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
genomic: GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaa ... aactaaaaagACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
EST: gi|58689337|gb|CK078024.1|CK078024
EST:     GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAG                         ACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
genomic: GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaa ... aactaaaaagACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
EST: gi|86905401|gb|CI285364.1|CI285364
EST:     GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAG                         ACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
genomic: GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaa ... aactaaaaagACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
EST: gi|33676538|gb|CF304777.1|CF304777
EST:     GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAG                         ACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
genomic: GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaa ... aactaaaaagACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
EST: gi|29613664|gb|CB618677.1|CB618677
EST:     GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAG                         ACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
genomic: GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaa ... aactaaaaagACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
EST: gi|29620639|gb|CB625650.1|CB625650
EST:     GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAG                         ACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
genomic: GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaa ... aactaaaaagACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
EST: gi|29688464|gb|CB684739.1|CB684739
EST:     GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAG                         ACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
genomic: GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaa ... aactaaaaagACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
EST: gi|88357318|gb|CI622167.1|CI622167
EST:     GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAG                         ACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
genomic: GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaa ... aactaaaaagACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
EST: gi|58667396|gb|CK056082.1|CK056082
EST:     GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAG                         ACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
genomic: GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaa ... aactaaaaagACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
EST: gi|88742624|gb|CI766132.1|CI766132
EST:     GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAG                         ACATTGGACATAGTTGCGGAGAATCCAGAT
genomic: GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaa ... aactaaaaagACATTGGACATAGTTGCGGAGAATCCAGAT
EST: gi|29681868|gb|CB678143.1|CB678143
EST:     GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAG                         ACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
genomic: GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaa ... aactaaaaagACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
EST: gi|58688271|gb|CK076958.1|CK076958
EST:     GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAG                         ACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
genomic: GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaa ... aactaaaaagACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
EST: gi|58608359|gb|CK036392.1|CK036392
EST:     GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAG                         ACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
genomic: GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaa ... aactaaaaagACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
EST: gi|88740293|gb|CI763801.1|CI763801
EST:     GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAG                         ACATTGGACATAGTTGCGGAGAATCCAGATAAA
genomic: GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaa ... aactaaaaagACATTGGACATAGTTGCGGAGAATCCAGATAAA
EST: gi|29617049|gb|CB622061.1|CB622061
EST:     GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAG                         ACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
genomic: GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaa ... aactaaaaagACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
EST: gi|88311639|gb|CI574856.1|CI574856
EST:     GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAG                         ACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
genomic: GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaa ... aactaaaaagACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
EST: gi|33663679|gb|CF294646.1|CF294646
EST:     GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAG                         ACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
genomic: GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaa ... aactaaaaagACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
EST: gi|29620626|gb|CB625637.1|CB625637
EST:     GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAG                         ACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
genomic: GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaa ... aactaaaaagACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
EST: gi|58607277|gb|CK035310.1|CK035310
EST:     GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAG                         ACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
genomic: GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaa ... aactaaaaagACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
EST: gi|58588201|gb|CF986509.1|CF986509
EST:     GCCCCAAGCCTAGCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAG                         ACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
genomic: GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaa ... aactaaaaagACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
EST: gi|88415659|gb|CI591439.1|CI591439
EST:     GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAG                         ACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
genomic: GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaa ... aactaaaaagACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
EST: gi|29620641|gb|CB625652.1|CB625652
EST:     GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAG                         ACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
genomic: GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaa ... aactaaaaagACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
EST: gi|33381852|gb|CF197195.1|CF197195
EST:     GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAG                         ACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
genomic: GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaa ... aactaaaaagACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
EST: gi|58658820|gb|CK047500.1|CK047500
EST:     GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAG                         ACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
genomic: GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaa ... aactaaaaagACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
EST: gi|88367566|gb|CI568338.1|CI568338
EST:     GCCC-AAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAG                         ACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCCTCT
genomic: GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaa ... aactaaaaagACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGC-TCT
EST: gi|58688021|gb|CK076708.1|CK076708
EST:     GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAG                         ACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
genomic: GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaa ... aactaaaaagACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
EST: gi|88408200|gb|CI601678.1|CI601678
EST:     GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAG                         ACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
genomic: GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaa ... aactaaaaagACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
EST: gi|58589270|gb|CF987578.1|CF987578
EST:     GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAG                         ACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
genomic: GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaa ... aactaaaaagACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
EST: gi|58690161|gb|CK078848.1|CK078848
EST:     GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAG                         ACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
genomic: GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaa ... aactaaaaagACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
EST: gi|58604657|gb|CK015185.1|CK015185
EST:     GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAG                         ACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
genomic: GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaa ... aactaaaaagACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
EST: gi|58654652|gb|CK043332.1|CK043332
EST:     GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAG                         ACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
genomic: GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaa ... aactaaaaagACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
EST: gi|58671429|gb|CK060115.1|CK060115
EST:     GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAG                         ACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
genomic: GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaa ... aactaaaaagACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
EST: gi|88736187|gb|CI759695.1|CI759695
EST:     GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAG                         ACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT
genomic: GCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaa ... aactaaaaagACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 96

AGCATGGCCTGGTCGAGCCGTTGTTGAACCTGGGAGGAGGTCATGGGATGGCCCCAAGCCTATCTCAATTGTTGGCTCAACCGGTTCTATTGGCACACAGgtaaatggaa ... aactaaaaagACATTGGACATAGTTGCGGAGAATCCAGATAAATTCCGGGTTGTTGCTCTTGCTGCTGGCTCCAATGTGACTCTTCTAGCTGATCAG




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