1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AATAGACTGCACAGGGGGCTTCCATCCATCTCTCTCTGCGCTTGTTGAGGGACTCGGATATGCAGCTCCGCCGATTATGGCTTTGCTCTTTATCCTCGACgtacgtatttatatataaatatttactaattacttgctctcttctcttcgatttgattaatctctgcctgcag
species | Oryza sativa |
transcript | 13114.m00108 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GACTCGGATATGCAGCTCCGCCGATTATGGCTTTGCTCTTTATCCTCGAC GATGAAGTTGTCAAATATTCACCTCATGCTCGCGCCATCAGGGATGTCGAGEST: gi|66916796|gb|CX103644.1|CX103644
genomic: GACTCGGATATGCAGCTCCGCCGATTATGGCTTTGCTCTTTATCCTCGACgtacgtattt ... ctgcctgcagGATGAAGTTGTCAAATATTCACCTCATGCTCGCGCCATCAGGGATGTCGAG
EST: GACTCGGATATGCAGCTCCGCCGATTATGGCTTTGCTCTTTATCCTCGAC GATGAAGTTGTCAAATATTCACCTCATGCTCGCGCCATCAGGGATGTCGAGEST: gi|38474222|gb|CF958354.1|CF958354
genomic: GACTCGGATATGCAGCTCCGCCGATTATGGCTTTGCTCTTTATCCTCGACgtacgtattt ... ctgcctgcagGATGAAGTTGTCAAATATTCACCTCATGCTCGCGCCATCAGGGATGTCGAG
EST: GACTCGGATATGCAGCTCCGCCGATTATGGCTTTGCTCTTTATCCTCGAC GATGAAGTCGTCAAATATTCACCTCATGCTCGCGCCATCCGGGATGTCGAGEST: gi|38481179|gb|CF965268.1|CF965268
genomic: GACTCGGATATGCAGCTCCGCCGATTATGGCTTTGCTCTTTATCCTCGACgtacgtattt ... ctgcctgcagGATGAAGTTGTCAAATATTCACCTCATGCTCGCGCCATCAGGGATGTCGAG
EST: GACTCGGATATGCAGCTCCGCCGATTATGGCTTTGCTCTTTATCCTCGAC GATGAAGTTGTCAAATATTCACCTCATGCTCGCGCCATCAGGGATGTCGAGEST: gi|14980567|gb|BI305245.1|BI305245
genomic: GACTCGGATATGCAGCTCCGCCGATTATGGCTTTGCTCTTTATCCTCGACgtacgtattt ... ctgcctgcagGATGAAGTTGTCAAATATTCACCTCATGCTCGCGCCATCAGGGATGTCGAG
EST: GACTCGGATATGCAGCTCCGCCGATTATGGCTTTGCTCTTTATCCTCGAC GATGAAGTTGTCAAATATTCACCTCATGCTCGCGCCATCAGGGATGTCGAGEST: gi|13420795|gb|AU174885.1|AU174885
genomic: GACTCGGATATGCAGCTCCGCCGATTATGGCTTTGCTCTTTATCCTCGACgtacgtattt ... ctgcctgcagGATGAAGTTGTCAAATATTCACCTCATGCTCGCGCCATCAGGGATGTCGAG
EST: GACTCGGATATGCAGCTCCGCCGATTATGGCTTTGCTCTTTATCCTCGAC GATGAAGTTGTCAAATATTCACCTCATGCTCGCGCCATCAGGGATGTCGAGEST: gi|29668134|gb|CB664409.1|CB664409
genomic: GACTCGGATATGCAGCTCCGCCGATTATGGCTTTGCTCTTTATCCTCGACgtacgtattt ... ctgcctgcagGATGAAGTTGTCAAATATTCACCTCATGCTCGCGCCATCAGGGATGTCGAG
EST: GACTCGGATATGCAGCTCCGCCGATTATGGCTTTGCTCTTTATCCTCGAC GATGAAGTTGTCAAATATTCACCTCATGCTCGCGCCATCAGGGATGTCGAGEST: gi|58690258|gb|CK078945.1|CK078945
genomic: GACTCGGATATGCAGCTCCGCCGATTATGGCTTTGCTCTTTATCCTCGACgtacgtattt ... ctgcctgcagGATGAAGTTGTCAAATATTCACCTCATGCTCGCGCCATCAGGGATGTCGAG
EST: GACTCGGATATGCAGCTCCGCCGATTATGGCTTTGCTCTTTATCCTCGAC GATGAAGTTGTCAAATATTCACCTCATGCTCGCGCCATCAGGGATGTCGAGEST: gi|33679460|gb|CF307699.1|CF307699
genomic: GACTCGGATATGCAGCTCCGCCGATTATGGCTTTGCTCTTTATCCTCGACgtacgtattt ... ctgcctgcagGATGAAGTTGTCAAATATTCACCTCATGCTCGCGCCATCAGGGATGTCGAG
EST: GACTCGGATATGCAGCTCCGCCGATTATGGCTTTGCTCTTTATCCTCGAC GATGAAGTTGTCAAATATTCACCTCATGCTCGCGCCATCAGGGATGTCGAG
genomic: GACTCGGATATGCAGCTCCGCCGATTATGGCTTTGCTCTTTATCCTCGACgtacgtattt ... ctgcctgcagGATGAAGTTGTCAAATATTCACCTCATGCTCGCGCCATCAGGGATGTCGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATAGACTGCACAGGGGGCTTCCATCCATCTCTCTCTGCGCTTGTTGAGGGACTCGGATATGCAGCTCCGCCGATTATGGCTTTGCTCTTTATCCTCGACgtacgtatttatatataaatatttactaattacttgctctcttctcttcgatttgattaatctctgcctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC