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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGGGTTACGGCTGAAACGTGATATCACTGAGTACGGGGAATTCGTTCGTAGCTTCAATGCCCCATCGATAGATGAAAAGTTTGAACTGCTTGGAATgtgagtgcgccttgtatcttgttatttctcagatggttctctaagtcgtccctaatataatttctattgcttatttgcag

Basic information

species Oryza sativa
transcript LOC_Os12g13590.2
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g13590.2 (Oryza sativa), 5'ss of exon 19
lower sequence: GRMZM5G823484_T01 (Zea mays), 5'ss of exon 8
TGGTGGGTTACGGCTGAAACGTGATATCACTGAGTACGGGGAATTCGTTCGTAGCTTCAATGCCCCATCGATAGATGAAAAGTTTGAACTGCTTGGAATgtgagtgcgccttgtatcttgttatttctcagatggttctctaagtcgtccctaatataatttctattgcttatttgcag
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TGGTGGCCTACGGTTGAAACGTGACATAACTGAATATGGGGATTTCGTTCGTAGCTTCAATGCCCCCTCCATAGATGAGAAGTTCGAACTGTTGGGAATgtaagtgttctatgtgtagtttcgtcat---gatgcttctgtcaa-ctctgctgatac----tgtatcttgtatttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33689209|gb|CF317448.1|CF317448
EST:     CGTAGCTTCAATGCCCCATCGATAGATGAAAAGTTTGAACTGCTTGGAAT                         CATGGCCAATGTATTCATCGTTGCTCCTGAAAGTCTAGCTTCCTTATTTGA
genomic: CGTAGCTTCAATGCCCCATCGATAGATGAAAAGTTTGAACTGCTTGGAATgtgagtgcgc ... ttatttgcagCATGGCCAATGTATTCATCGTTGCTCCTGAAAGTCTAGCTTCCTTATTTGA
EST: gi|87029720|gb|CI274401.1|CI274401
EST:     CGTAGCTTCAATGCCCCATCGATAGATGAAAAGTTTGAACTGCTTGGAAT                         CATGGCCAATGTATTCATCGTTGCTCCTGAAAGTCTAGCTTCCTTATTTGA
genomic: CGTAGCTTCAATGCCCCATCGATAGATGAAAAGTTTGAACTGCTTGGAATgtgagtgcgc ... ttatttgcagCATGGCCAATGTATTCATCGTTGCTCCTGAAAGTCTAGCTTCCTTATTTGA
EST: gi|88546679|gb|CI476345.1|CI476345
EST:     TGAACTGCTTGGAAT                         CATGGCCAATGTATTCATCGTTGCTCCTGAAAGTCTAGCTTCCTTATTTGA
genomic: TGAACTGCTTGGAATgtgagtgcgc ... ttatttgcagCATGGCCAATGTATTCATCGTTGCTCCTGAAAGTCTAGCTTCCTTATTTGA
EST: gi|66920327|gb|CX107175.1|CX107175
EST:     CGTAGCTTCAATGCCCCATCGATAGATGAAAAGTTTGAACTGCTTGGAAT                         CATGGCCAATGTATTCATCGTTGCTCCTGAAAGTCTAGCTTCCTTATTTGA
genomic: CGTAGCTTCAATGCCCCATCGATAGATGAAAAGTTTGAACTGCTTGGAATgtgagtgcgc ... ttatttgcagCATGGCCAATGTATTCATCGTTGCTCCTGAAAGTCTAGCTTCCTTATTTGA
EST: gi|88980840|gb|CI022530.1|CI022530
EST:     ATGCCCCATCGATAGATGAAAAGTTTGAACTGCTTGGAAT                         CATGGCCAATGTATTCATCGTTGCTCCTGAAAGTCTAGCTTCCTTATTTGA
genomic: ATGCCCCATCGATAGATGAAAAGTTTGAACTGCTTGGAATgtgagtgcgc ... ttatttgcagCATGGCCAATGTATTCATCGTTGCTCCTGAAAGTCTAGCTTCCTTATTTGA
EST: gi|88974506|gb|CI022047.1|CI022047
EST:     CGTAGCTTCAATGCCCCATCGATAGATGAAAAGTTTGAACTGCTTGGAAT                         CATGGCCAATGTATTCATCGTTGCTCCTGAAAGTCTAGCTTCCTTATTTGA
genomic: CGTAGCTTCAATGCCCCATCGATAGATGAAAAGTTTGAACTGCTTGGAATgtgagtgcgc ... ttatttgcagCATGGCCAATGTATTCATCGTTGCTCCTGAAAGTCTAGCTTCCTTATTTGA
EST: gi|27577943|gb|CB000638.1|CB000638
EST:     CGTAGCTTCAATGCCCCATCGATAGATGAAAAGTTTGAACTGCTTGGAAT                         CATGGCCAATGTATTCATCGTTGCTCCTGAAAGTCTAGCTTCCTTATTTGA
genomic: CGTAGCTTCAATGCCCCATCGATAGATGAAAAGTTTGAACTGCTTGGAATgtgagtgcgc ... ttatttgcagCATGGCCAATGTATTCATCGTTGCTCCTGAAAGTCTAGCTTCCTTATTTGA
EST: gi|58666677|gb|CK055363.1|CK055363
EST:     CGTAGCTTCAATGCCCCATCGATAGATGAAAAGTTTGAACTGCTTGGAAT                         CATGGCCAATGTATTCATCGTTGCTCCTGAAAGTCTAGCTTCCTTATTTGA
genomic: CGTAGCTTCAATGCCCCATCGATAGATGAAAAGTTTGAACTGCTTGGAATgtgagtgcgc ... ttatttgcagCATGGCCAATGTATTCATCGTTGCTCCTGAAAGTCTAGCTTCCTTATTTGA
EST: gi|33689213|gb|CF317452.1|CF317452
EST:     CGTAGCTTCAATGCCCCATCGATAGATGAAAAGTTTGAACTGCTTGGAAT                         CATGGCCAATGTATTCATCGTTGCTCCTGAAAGTCTAGCTTCCTTATTTGA
genomic: CGTAGCTTCAATGCCCCATCGATAGATGAAAAGTTTGAACTGCTTGGAATgtgagtgcgc ... ttatttgcagCATGGCCAATGTATTCATCGTTGCTCCTGAAAGTCTAGCTTCCTTATTTGA
EST: gi|88508860|gb|CI436366.1|CI436366
EST:     CGTAGCTTCAATGCCCCATCGATAGATGAAAAGTTTGAACTGCTTGGAAT                         CATGGCCAATGTATTCATCGTTGCTCCTGAAAGTCTAGCTTCCTTATTTGA
genomic: CGTAGCTTCAATGCCCCATCGATAGATGAAAAGTTTGAACTGCTTGGAATgtgagtgcgc ... ttatttgcagCATGGCCAATGTATTCATCGTTGCTCCTGAAAGTCTAGCTTCCTTATTTGA
EST: gi|27576853|gb|CA999547.1|CA999547
EST:     CGTAGCTTCAATGCCCCATCGATAGATGAAAAGTTTGAACTGCTTGGAAT                         CATGGCCAATGTATTCATCGTTGCTCCTGAAAGTCTAGCTTCCTTATTTGA
genomic: CGTAGCTTCAATGCCCCATCGATAGATGAAAAGTTTGAACTGCTTGGAATgtgagtgcgc ... ttatttgcagCATGGCCAATGTATTCATCGTTGCTCCTGAAAGTCTAGCTTCCTTATTTGA
EST: gi|29632379|gb|CB637388.1|CB637388
EST:     CGTAGCTTCAATGCCCCATCGATAGATGAAAAGTTTGAACTGCTTGGAAT                         CATGGCCAATGTATTCATCGTTGCTCCTGAAAGTCTAGCTTCCTTATTTGA
genomic: CGTAGCTTCAATGCCCCATCGATAGATGAAAAGTTTGAACTGCTTGGAATgtgagtgcgc ... ttatttgcagCATGGCCAATGTATTCATCGTTGCTCCTGAAAGTCTAGCTTCCTTATTTGA
EST: gi|87029773|gb|CI274454.1|CI274454
EST:     CGTAGCTTCAATGCCCCATCGATAGATGAAAAGTTTGAACTGCTTGGAAT                         CATGGCCAATGTATTCATCGTTGCTCCTGAAAGTCTAGCTTCCTTATTTGA
genomic: CGTAGCTTCAATGCCCCATCGATAGATGAAAAGTTTGAACTGCTTGGAATgtgagtgcgc ... ttatttgcagCATGGCCAATGTATTCATCGTTGCTCCTGAAAGTCTAGCTTCCTTATTTGA