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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGCTCTCTTCCAGTAATGGAGGCGTATTCCCACATGCTGTTCTTTCTGCCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAGgtgaggtttggttcaaatattctcttatcctacttagtgctatcctaagtgtatatatggaccgtctctaatttatatgtacattttatctgcggcctgcag

Basic information

species Oryza sativa
transcript LOC_Os11g48090.3
intron # 19
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88831635|gb|CI369317.1|CI369317
EST:     CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAG                         CTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
genomic: CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAGgtgaggtttg ... cggcctgcagCTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
EST: gi|29673291|gb|CB669566.1|CB669566
EST:     CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAG                         CTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
genomic: CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAGgtgaggtttg ... cggcctgcagCTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
EST: gi|87023349|gb|CI272177.1|CI272177
EST:     CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAG                         CTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
genomic: CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAGgtgaggtttg ... cggcctgcagCTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
EST: gi|88837300|gb|CI078660.1|CI078660
EST:     CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAG                         CTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
genomic: CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAGgtgaggtttg ... cggcctgcagCTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
EST: gi|88522256|gb|CI450001.1|CI450001
EST:     CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAG                         CTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
genomic: CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAGgtgaggtttg ... cggcctgcagCTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
EST: gi|88541755|gb|CI471043.1|CI471043
EST:     CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAG                         CTTNAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
genomic: CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAGgtgaggtttg ... cggcctgcagCTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
EST: gi|88558000|gb|CI488452.1|CI488452
EST:     CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAG                         CTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
genomic: CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAGgtgaggtttg ... cggcctgcagCTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
EST: gi|88292118|gb|CI534912.1|CI534912
EST:     AAACCAACCACTGTTGCTGAG                         CTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
genomic: AAACCAACCACTGTTGCTGAGgtgaggtttg ... cggcctgcagCTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
EST: gi|88438654|gb|CI543758.1|CI543758
EST:     CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAG                         CTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
genomic: CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAGgtgaggtttg ... cggcctgcagCTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
EST: gi|86865578|gb|CI330990.1|CI330990
EST:     CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAG                         CTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
genomic: CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAGgtgaggtttg ... cggcctgcagCTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
EST: gi|88322302|gb|CI540270.1|CI540270
EST:     CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAG                         CTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
genomic: CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAGgtgaggtttg ... cggcctgcagCTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
EST: gi|88451259|gb|CI534252.1|CI534252
EST:     CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAG                         CTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
genomic: CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAGgtgaggtttg ... cggcctgcagCTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
EST: gi|88438987|gb|CI531167.1|CI531167
EST:     TTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAG                         CTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
genomic: TTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAGgtgaggtttg ... cggcctgcagCTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
EST: gi|88554031|gb|CI484180.1|CI484180
EST:     CCCAGCGAATTTCCCTCCTGAACCGCCAAGAACCAACCACTGTTGCTGAG                         CTTNG-AAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGAT
genomic: CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAGgtgaggtttg ... cggcctgcagCTT-GAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGAT
EST: gi|88555485|gb|CI485744.1|CI485744
EST:     CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAG                         CTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
genomic: CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAGgtgaggtttg ... cggcctgcagCTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
EST: gi|66918333|gb|CX105181.1|CX105181
EST:     CCCAGCAAATTTCCCTCCTGAACCGNCAAAAACCAACCACTGTTGCTGAG                         CTTGAAAAGCTTATAGGAAAGGTTAAGACAGTTAAGTACGGGAGCGCGATC
genomic: CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAGgtgaggtttg ... cggcctgcagCTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
EST: gi|29639799|gb|CB644808.1|CB644808
EST:     CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAG                         CTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
genomic: CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAGgtgaggtttg ... cggcctgcagCTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
EST: gi|29639599|gb|CB644608.1|CB644608
EST:     CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAG                         CTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
genomic: CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAGgtgaggtttg ... cggcctgcagCTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
EST: gi|88466974|gb|CI539770.1|CI539770
EST:     CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAG                         CTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
genomic: CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAGgtgaggtttg ... cggcctgcagCTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
EST: gi|86873878|gb|CI334410.1|CI334410
EST:     CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAG                         CTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
genomic: CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAGgtgaggtttg ... cggcctgcagCTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
EST: gi|88553651|gb|CI483776.1|CI483776
EST:     CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAG                         CTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
genomic: CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAGgtgaggtttg ... cggcctgcagCTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
EST: gi|88544774|gb|CI472901.1|CI472901
EST:     CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAG                         CTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
genomic: CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAGgtgaggtttg ... cggcctgcagCTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
EST: gi|88527294|gb|CI455437.1|CI455437
EST:     CCCAGCAAATTTCCCTCCTGAACCCCCAAAAACCAACCACTGTTGCTGAG                         CTTGAAAAGCTTATAGGAAAGGTTAACACAGGTAAGTACGGGAGCGCGATC
genomic: CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAGgtgaggtttg ... cggcctgcagCTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
EST: gi|88524261|gb|CI452159.1|CI452159
EST:     CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAG                         CTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
genomic: CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAGgtgaggtttg ... cggcctgcagCTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
EST: gi|88555278|gb|CI485524.1|CI485524
EST:     CCCAGCAAATTTCCCTCCTGAACCNCCAAAAACCAACCACTGTTGCTGAG                         CTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
genomic: CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAGgtgaggtttg ... cggcctgcagCTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
EST: gi|29626859|gb|CB631870.1|CB631870
EST:     CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAG                         CTTGAAAAGCTTATAGGAAAGGTTAAGACAGTTAAGTACGGGAGCGCGATC
genomic: CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAGgtgaggtttg ... cggcctgcagCTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
EST: gi|86903584|gb|CI300438.1|CI300438
EST:     CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAG                         CTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
genomic: CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAGgtgaggtttg ... cggcctgcagCTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
EST: gi|87027466|gb|CI272231.1|CI272231
EST:     CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAG                         CTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
genomic: CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAGgtgaggtttg ... cggcctgcagCTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
EST: gi|88533748|gb|CI460409.1|CI460409
EST:     CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAG                         CTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
genomic: CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAGgtgaggtttg ... cggcctgcagCTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
EST: gi|86479042|gb|CI121675.1|CI121675
EST:     CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAG                         CTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
genomic: CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAGgtgaggtttg ... cggcctgcagCTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
EST: gi|89168449|gb|CI038803.1|CI038803
EST:     CCCAGCCAATTTCCCTCCTGAACCGCCCAAAACCTACCACTGTTGCTGAG                         CTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC
genomic: CCCAGCAAATTTCCCTCCTGAACCGCCAAAAACCAACCACTGTTGCTGAGgtgaggtttg ... cggcctgcagCTTGAAAAGCTTATAGGAAAGGTTAAGACAGGTAAGTACGGGAGCGCGATC