1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
GCTGTATACAAATAATGGGGTTGCGCTTTTGGCTCTTGGCTCTAATGCTGTTCATAAGCTGTGGAAATGGCAACGCACTGATAGGAATCCTAATGGCAAGgttagagtggagagttgttcttatttggatttcatctgttcttatttggatttcatctgctattctgtttgcttggtttctaaatatatgcatatattgtag
species | Oryza sativa |
transcript | LOC_Os08g06480.1 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
EST: TTCATAAGCTGTGGAAATGGCAACGCACTGATAGGAATCCTAATGGCAAG TCCACTGCATCTTGCACTCCTCAAATGTGGCAACCAGCAAATGGGATTCTTEST: gi|66913224|gb|CX100072.1|CX100072
genomic: TTCATAAGCTGTGGAAATGGCAACGCACTGATAGGAATCCTAATGGCAAGgttagagtgg ... tatattgtagTCCACTGCATCTTTCACTCCTCAAATGTGGCAACCAGCAAATGGGATTCTT
EST: TTCATAAGCTGTGGAAATGGCAACGCACTGATAGGAATACTAATGGCAAG TCCACTGCATCTTTCACTCCTCAAATGTGGCAACCAGCAAATGGGATTCTTEST: gi|58681187|gb|CK069874.1|CK069874
genomic: TTCATAAGCTGTGGAAATGGCAACGCACTGATAGGAATCCTAATGGCAAGgttagagtgg ... tatattgtagTCCACTGCATCTTTCACTCCTCAAATGTGGCAACCAGCAAATGGGATTCTT
EST: TTCATAAGCTGTGGAAATGGCAACGCACTGATAGGAATCCTAATGGCAAG TCCACTGCATCTTTCACTCCTCAAATGTGGCAACCAGCAAATGGGATTCTTEST: gi|163929084|gb|EG710965.1|EG710965
genomic: TTCATAAGCTGTGGAAATGGCAACGCACTGATAGGAATCCTAATGGCAAGgttagagtgg ... tatattgtagTCCACTGCATCTTTCACTCCTCAAATGTGGCAACCAGCAAATGGGATTCTT
EST: TTCATAAGCTGTGGAAATGGCAACGCACTGATAGGAATCCTAATGGCAAG TCCACTGCATCTTTCACTCCTCAAATGTGGCAACCAGCAAATGGGATTCTTEST: gi|300216043|gb|HO088669.1|HO088669
genomic: TTCATAAGCTGTGGAAATGGCAACGCACTGATAGGAATCCTAATGGCAAGgttagagtgg ... tatattgtagTCCACTGCATCTTTCACTCCTCAAATGTGGCAACCAGCAAATGGGATTCTT
EST: TTCATAAGCTGTGGAAATGGCAACGCACTGATAGGAATCCTAATGGCAAG TCCACTGCATCTTTCACTCCTCAAATGTGGCAACCAGCAAATGGGATTCTTEST: gi|33675039|gb|CF303278.1|CF303278
genomic: TTCATAAGCTGTGGAAATGGCAACGCACTGATAGGAATCCTAATGGCAAGgttagagtgg ... tatattgtagTCCACTGCATCTTTCACTCCTCAAATGTGGCAACCAGCAAATGGGATTCTT
EST: TTCATAAGCTGTGGAAATGGCAACGCACTGATAGGAATCCTAATGGCAAG TCCACTGCATCTTTCACTCCTCEST: gi|86907237|gb|CI292823.1|CI292823
genomic: TTCATAAGCTGTGGAAATGGCAACGCACTGATAGGAATCCTAATGGCAAGgttagagtgg ... tatattgtagTCCACTGCATCTTTCACTCCTC
EST: TTCATAAGCTGTGGAAATGGCAACGCACTGATAGGAATCCTAATGGCAAG TCCACTGCATCTTTCACTCCTCAAATGTGGCAACCAGCAAATGGGATTCTTEST: gi|58667666|gb|CK056352.1|CK056352
genomic: TTCATAAGCTGTGGAAATGGCAACGCACTGATAGGAATCCTAATGGCAAGgttagagtgg ... tatattgtagTCCACTGCATCTTTCACTCCTCAAATGTGGCAACCAGCAAATGGGATTCTT
EST: TTCATAAGCTGTGGAAATGGCAACGCACTGATAGGAATCCTAATGGCAAG TCCACTGCATCTTTCACTCCTCAAATGTGGCAACCAGCAAATGGGATTCTTEST: gi|88316475|gb|CI621714.1|CI621714
genomic: TTCATAAGCTGTGGAAATGGCAACGCACTGATAGGAATCCTAATGGCAAGgttagagtgg ... tatattgtagTCCACTGCATCTTTCACTCCTCAAATGTGGCAACCAGCAAATGGGATTCTT
EST: TTCATAAGCTGTGGAAATGGCAACGCACTGATAGGAATCCTAATGGCAAG TCCACTGCATCTTTCACTCCTCAAATGTGGCAACCAGCAAATGGGATTCTTEST: gi|55411770|gb|CV724146.1|CV724146
genomic: TTCATAAGCTGTGGAAATGGCAACGCACTGATAGGAATCCTAATGGCAAGgttagagtgg ... tatattgtagTCCACTGCATCTTTCACTCCTCAAATGTGGCAACCAGCAAATGGGATTCTT
EST: TTCATAAGCTGTGGAAATGGCAACGCACTGATAGGAATCCTAATGGCAAG TCCACTGCATCTTTCACTCCTCANATGTGGCAACCAGCAAATGGGATTCTTEST: gi|88415142|gb|CI583965.1|CI583965
genomic: TTCATAAGCTGTGGAAATGGCAACGCACTGATAGGAATCCTAATGGCAAGgttagagtgg ... tatattgtagTCCACTGCATCTTTCACTCCTCAAATGTGGCAACCAGCAAATGGGATTCTT
EST: TTCATAAGCTGTGGGAATGGCAACGCACTGATAGGAATCCTAATGGCAAG TCCACTTGCATCTTTCACTCCTCAAATGTGGCAACCAGCAAATGGGATTCT
genomic: TTCATAAGCTGTGGAAATGGCAACGCACTGATAGGAATCCTAATGGCAAGgttagagtgg ... tatattgtagTCCAC-TGCATCTTTCACTCCTCAAATGTGGCAACCAGCAAATGGGATTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGTATACAAATAATGGGGTTGCGCTTTTGGCTCTTGGCTCTAATGCTGTTCATAAGCTGTGGAAATGGCAACGCACTGATAGGAATCCTAATGGCAAGgttagagtggagagttgttcttatttggatttcatctgttcttatttggatttcatctgctattctgtttgcttggtttctaaatatatgcatatattgtag
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