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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtacttcgtactagcttctctgcctggagtctgatctcttcccgtacttgtcagcacgtttgtttctgttggtaattgcgtttgttactggcccgcag

Basic information

species Oryza sativa
transcript LOC_Os07g49270.2
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g49270.1 (Oryza sativa), 5'ss of exon 19
lower sequence: GRMZM2G134396_T01 (Zea mays), 5'ss of exon 1
-TCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtacttc-gtactagcttctctgcctggagtctgatctcttcccgtacttgtcagcacgtttgtttctgttggtaattgcgtttgttactggcccgcag---
 || |||||||| |||||||||||||||| ||| ||||  || ||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||| || |||||    | | |   |   || |  |    | || |   ||| ||   |||  ||  |    | |||  | |  || | |||     ||   
GTCTCACTGGATCGGGAGAAACTACTACAGAAGGGGTCCGGAGGGCAATGACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACTgtatgtacctctgtactg---tatttaaataatgtatcttagtgtgccttttctgttag-gtgttgtttggttcacggaatatcat--gtaaatggtaataagttt

upper sequence: LOC_Os07g49270.1 (Oryza sativa), 5'ss of exon 19
lower sequence: GRMZM2G134396_T03 (Zea mays), 5'ss of exon 18
TCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtacttc-gtactagcttctctgcctggagtctgatctcttcccgtacttgtcagcacgtttgtttctgttggtaattgcgtttgttactggcccgcag---
|| |||||||| |||||||||||||||| ||| ||||  || ||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||| || |||||    | | |   |   || |  |    | || |   ||| ||   |||  ||  |    | |||  | |  || | |||     ||   
TCTCACTGGATCGGGAGAAACTACTACAGAAGGGGTCCGGAGGGCAATGACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACTgtatgtacctctgtactg---tatttaaataatgtatcttagtgtgccttttctgttag-gtgttgtttggttcacggaatatcat--gtaaatggtaataagttt

upper sequence: LOC_Os07g49270.1 (Oryza sativa), 5'ss of exon 19
lower sequence: PP1S307_76V6.1 (Physcomitrella patens), 5'ss of exon 18
TCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtacttcgtactagcttctctgcctggagtctgatct------cttcccgtacttgtcagcacgtttgtttctgttggtaattgcgtttgt-tactggcccgcag----------------------------
      ||||||||   |||||||||||| |||||||    |||||||||||||||| |||||||||| |||||||| ||  || | ||||| ||    ||| |       ||  |  |   |  |||||  | | || |      || | |   |||| || |  | |||  | | ||   ||     ||    | ||    |   |                            
GTGAGATGGATTGGACCAAACTACTACAAGAGAGGTCCACTTGGCAATGACATTCACAAGACAAATGTGCCTCACATGAGAGTTAATTTCCGCCATGAGgtaagataaaattaacatatgtaccacctggcattttatgtgtaaatctactctatcttgccaacgtgcttggctattttatcaaactaattgccatgctaaaactttgaattgaaacttgtttgctatggatggag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33675288|gb|CF303527.1|CF303527
EST:     ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|163927650|gb|EG712446.1|EG712446
EST:     ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|163926592|gb|EG713608.1|EG713608
EST:     ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTG