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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtacttcgtactagcttctctgcctggagtctgatctcttcccgtacttgtcagcacgtttgtttctgttggtaattgcgtttgttactggcccgcag

Basic information

species Oryza sativa
transcript LOC_Os07g49270.1
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g49270.1 (Oryza sativa), 5'ss of exon 19
lower sequence: GRMZM2G134396_T01 (Zea mays), 5'ss of exon 1
-TCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtacttc-gtactagcttctctgcctggagtctgatctcttcccgtacttgtcagcacgtttgtttctgttggtaattgcgtttgttactggcccgcag---
 || |||||||| |||||||||||||||| ||| ||||  || ||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||| || |||||    | | |   |   || |  |    | || |   ||| ||   |||  ||  |    | |||  | |  || | |||     ||   
GTCTCACTGGATCGGGAGAAACTACTACAGAAGGGGTCCGGAGGGCAATGACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACTgtatgtacctctgtactg---tatttaaataatgtatcttagtgtgccttttctgttag-gtgttgtttggttcacggaatatcat--gtaaatggtaataagttt

upper sequence: LOC_Os07g49270.1 (Oryza sativa), 5'ss of exon 19
lower sequence: GRMZM2G134396_T03 (Zea mays), 5'ss of exon 18
TCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtacttc-gtactagcttctctgcctggagtctgatctcttcccgtacttgtcagcacgtttgtttctgttggtaattgcgtttgttactggcccgcag---
|| |||||||| |||||||||||||||| ||| ||||  || ||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||| || |||||    | | |   |   || |  |    | || |   ||| ||   |||  ||  |    | |||  | |  || | |||     ||   
TCTCACTGGATCGGGAGAAACTACTACAGAAGGGGTCCGGAGGGCAATGACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACTgtatgtacctctgtactg---tatttaaataatgtatcttagtgtgccttttctgttag-gtgttgtttggttcacggaatatcat--gtaaatggtaataagttt

upper sequence: LOC_Os07g49270.1 (Oryza sativa), 5'ss of exon 19
lower sequence: PP1S307_76V6.1 (Physcomitrella patens), 5'ss of exon 18
TCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtacttcgtactagcttctctgcctggagtctgatct------cttcccgtacttgtcagcacgtttgtttctgttggtaattgcgtttgt-tactggcccgcag----------------------------
      ||||||||   |||||||||||| |||||||    |||||||||||||||| |||||||||| |||||||| ||  || | ||||| ||    ||| |       ||  |  |   |  |||||  | | || |      || | |   |||| || |  | |||  | | ||   ||     ||    | ||    |   |                            
GTGAGATGGATTGGACCAAACTACTACAAGAGAGGTCCACTTGGCAATGACATTCACAAGACAAATGTGCCTCACATGAGAGTTAATTTCCGCCATGAGgtaagataaaattaacatatgtaccacctggcattttatgtgtaaatctactctatcttgccaacgtgcttggctattttatcaaactaattgccatgctaaaactttgaattgaaacttgtttgctatggatggag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87023333|gb|CI272161.1|CI272161
EST:     ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|88523784|gb|CI451637.1|CI451637
EST:     ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|86480848|gb|CI123481.1|CI123481
EST:     ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|86827778|gb|CI272965.1|CI272965
EST:     ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATGATACC
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGAT-ATACC
EST: gi|29671781|gb|CB668056.1|CB668056
EST:     ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|86415184|gb|CI069587.1|CI069587
EST:     TTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: TTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|86513328|gb|CI155961.1|CI155961
EST:     ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|86481224|gb|CI123857.1|CI123857
EST:     ACATTCACCAGACCAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|86481989|gb|CI124622.1|CI124622
EST:     ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGATAATACATCTGAGGAATGTTGATATACCG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|86437389|gb|CI119111.1|CI119111
EST:     ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|89169860|gb|CI110219.1|CI110219
EST:     ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|33675288|gb|CF303527.1|CF303527
EST:     ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|88279953|gb|CI401151.1|CI401151
EST:     GTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGGAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: GTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|88279717|gb|CI400915.1|CI400915
EST:     ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|87042124|gb|CI194748.1|CI194748
EST:     ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|88221174|gb|CI221130.1|CI221130
EST:     ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGATACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|29663750|gb|CB660025.1|CB660025
EST:     ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|86478852|gb|CI121485.1|CI121485
EST:     ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|88451222|gb|CI534215.1|CI534215
EST:     ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|86477898|gb|CI120531.1|CI120531
EST:     ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|8527210|gb|AU092025.1|AU092025
EST:     ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|86437366|gb|CI119088.1|CI119088
EST:     ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|86827504|gb|CI272857.1|CI272857
EST:     ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|88273930|gb|CI394336.1|CI394336
EST:     ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|88966319|gb|CI119454.1|CI119454
EST:     ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|87030186|gb|CI270196.1|CI270196
EST:     ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACGCACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|86477978|gb|CI120611.1|CI120611
EST:     ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|88277862|gb|CI398664.1|CI398664
EST:     ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|86437139|gb|CI118861.1|CI118861
EST:     ATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: ATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|58695027|gb|CK083714.1|CK083714
EST:     ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|88380576|gb|CI521145.1|CI521145
EST:     CACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: CACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|88852596|gb|CI374364.1|CI374364
EST:     ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|8527425|gb|AU092240.1|AU092240
EST:     ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|163927650|gb|EG712446.1|EG712446
EST:     ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|88279451|gb|CI399936.1|CI399936
EST:     ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAGTTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCC
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|86481726|gb|CI124359.1|CI124359
EST:     ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|86827161|gb|CI270859.1|CI270859
EST:     ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|86433605|gb|CI093948.1|CI093948
EST:     ACATTCACCAGACAAATGTTCCCCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|86436955|gb|CI118677.1|CI118677
EST:     ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|86477298|gb|CI119931.1|CI119931
EST:     ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|88538459|gb|CI467492.1|CI467492
EST:     ACATTCACCAGACCAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|88971765|gb|CI389002.1|CI389002
EST:     ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|163926592|gb|EG713608.1|EG713608
EST:     ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTG
EST: gi|87027426|gb|CI272191.1|CI272191
EST:     ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|88966359|gb|CI119494.1|CI119494
EST:     ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
EST: gi|88955645|gb|CI091934.1|CI091934
EST:     ACATTTACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACT                         ATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG
genomic: ACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 73 (upstream exon), 68 (downstream exon)
Score: 61

TCACACTGGATTGGGAGAAACTACTACAAAAGAGGTCATGATGGCAATGACATTCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTgtatgtactt ... tggcccgcagATTTGGAAAGAAGAAATGGAGCTAATACATCTGAGGAATGTTGATATACCGGAAGAAATTGATAGGTGAAGACCTGGCAAGAATTTTGCAAACCCTGAAG




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