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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGAACCTCCCTCTGAACCTCCAAGTAACAAGAAAATGGCTAATACACCTTCCTTGGCTGCCCCTACCGTAAGCCCTTTGGCGAGGTTCCTTCTTACAAGgtttgtttagagaaattgtttcccttttcttattattgctttcccacaacaaagagtgagttgatgccattggtgcag

Basic information

species Oryza sativa
transcript LOC_Os07g32400.1
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g32400.1 (Oryza sativa), 5'ss of exon 19
lower sequence: GRMZM2G027756_T01 (Zea mays), 5'ss of exon 19
CTGAACCTCCCTCTGAACCTCCAAGTAACAAGAAAATGGCTAATACACCTTCCTTGGCTGCCCCTACCGTAAGCCCTTTGGCGAGGTTCCTTCTTACAAGgtttgtttagagaaattgtttcccttttcttattattgctttcccacaacaaagagtgagttgatgccattggtgcag
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CTGAACCTCCCTCTGAAAAAGCAGGCGACAAGAAGTTAGCTAATATGCCACCATTGGCTGCTCCTACCGTGAGCCCACTGGCAAGGTTCCTTCTCACAAGgttggttcagagtcac-atatttttcagcttgcttagtaatacccatgacaagtaacaagtttctgccatctttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88273108|gb|CI388564.1|CI388564
EST:     TCCTTGGCTGCCCCTACCGTAAGCCCTTTGGCGAGGTTCCTTCTTACAAG                         GTGGCAAAACCAAGTTTCCCAAGATCTTAACTCCGCCTGAAGACAATAC
genomic: TCCTTGGCTGCCCCTACCGTAAGCCCTTTGGCGAGGTTCCTTCTTACAAGgtttgtttag ... attggtgcagGTGGCAAAACCAAGTTTCCCAAGATCTTAACTCCGTCTGAAGACAATAC
EST: gi|86844981|gb|CI340969.1|CI340969
EST:     TCCTTGGCTGCCCCTACCGTAAGCCCTTTGGCGAGGTTCCTTCTTACAAG                         GTGGCAAAACCAAGTTTCCCAAGATCTTAACTCCGTCTGAAGACAATAC
genomic: TCCTTGGCTGCCCCTACCGTAAGCCCTTTGGCGAGGTTCCTTCTTACAAGgtttgtttag ... attggtgcagGTGGCAAAACCAAGTTTCCCAAGATCTTAACTCCGTCTGAAGACAATAC
EST: gi|87020794|gb|CI269511.1|CI269511
EST:     TCCTTGGCTGCCCCTACCGTAAGCCCTTTGGCGAGGTTCCTTCTTACAAG                         GTGGCAAAACCAAGTTTCCCAAGATCT-AACTCCGTCTGAAGACAATAC
genomic: TCCTTGGCTGCCCCTACCGTAAGCCCTTTGGCGAGGTTCCTTCTTACAAGgtttgtttag ... attggtgcagGTGGCAAAACCAAGTTTCCCAAGATCTTAACTCCGTCTGAAGACAATAC
EST: gi|87032664|gb|CI270299.1|CI270299
EST:     TCCTTGGCTGCCCCTACCGTAAGCCCTTTGGCGAGGTTCCTTCTTACAAG                         GTGGCAAAACCAAGTTTCCCAAGATCTTAACTCCGTCTGAAGACAATAC
genomic: TCCTTGGCTGCCCCTACCGTAAGCCCTTTGGCGAGGTTCCTTCTTACAAGgtttgtttag ... attggtgcagGTGGCAAAACCAAGTTTCCCAAGATCTTAACTCCGTCTGAAGACAATAC
EST: gi|88228909|gb|CI226760.1|CI226760
EST:     TCCTTGGCTGCCCCTACCGTAAGCCCTTTGGCGAGGTTCCTTCTTACAAG                         GTGGCAAAACCAAGTTTCCCAAGATCTTAACTCCGTCTGAAG-CAATAC
genomic: TCCTTGGCTGCCCCTACCGTAAGCCCTTTGGCGAGGTTCCTTCTTACAAGgtttgtttag ... attggtgcagGTGGCAAAACCAAGTTTCCCAAGATCTTAACTCCGTCTGAAGACAATAC
EST: gi|88997813|gb|CI390351.1|CI390351
EST:     TCCTTGGCTGCCCCTACCGTAAGCCCTTTGGCGAGGTTCCTTCTTACAAG                         GTGGCAAAACCAAGTTTCCCAAGATCTTAACTCCGTCTGAAGACAA
genomic: TCCTTGGCTGCCCCTACCGTAAGCCCTTTGGCGAGGTTCCTTCTTACAAGgtttgtttag ... attggtgcagGTGGCAAAACCAAGTTTCCCAAGATCTTAACTCCGTCTGAAGACAA
EST: gi|29661925|gb|CB658200.1|CB658200
EST:     TCCTTGGCTGCCCCTACCGTAAGCCCTTTGGCGAGGTTCCTTCTTACAAG                         GTGGCAAAACCAAGTTTCCCAAGATCTTAACTCCGTCTGAAGACAATAC
genomic: TCCTTGGCTGCCCCTACCGTAAGCCCTTTGGCGAGGTTCCTTCTTACAAGgtttgtttag ... attggtgcagGTGGCAAAACCAAGTTTCCCAAGATCTTAACTCCGTCTGAAGACAATAC
EST: gi|86820988|gb|CI357680.1|CI357680
EST:     TCCTTGGCTGCCCCTACCGTAAGCCCTTTGGCGAGGTTCCTTCTTACAAG                         GTGGCAAAACCAAGTTTCCCAAGATCTTAACTCCGTCTGAAGACAATAC
genomic: TCCTTGGCTGCCCCTACCGTAAGCCCTTTGGCGAGGTTCCTTCTTACAAGgtttgtttag ... attggtgcagGTGGCAAAACCAAGTTTCCCAAGATCTTAACTCCGTCTGAAGACAATAC
EST: gi|87038070|gb|CI190694.1|CI190694
EST:     TCCTTGGCTGCCCCTACCGTAAGCCCTTTGGCGAGGTTCCTTCTTACAAG                         GTGGCAAAACCAAGTTTCCCAAGATCTTAACTCCGTCTGAAGACAATACNN
genomic: TCCTTGGCTGCCCCTACCGTAAGCCCTTTGGCGAGGTTCCTTCTTACAAGgtttgtttag ... attggtgcagGTGGCAAAACCAAGTTTCCCAAGATCTTAACTCCGTCTGAAGACAATACAA
EST: gi|86528838|gb|CI169044.1|CI169044
EST:     TCCTTGGCTGCCCCTACCGTAAGCCCTTTGGCGAGGTTCCTTCTTACAAG                         GTGGCAAAACCAAGTTTCCCAAGATCTTAACTCCGTCTGAAGACAATAC
genomic: TCCTTGGCTGCCCCTACCGTAAGCCCTTTGGCGAGGTTCCTTCTTACAAGgtttgtttag ... attggtgcagGTGGCAAAACCAAGTTTCCCAAGATCTTAACTCCGTCTGAAGACAATAC
EST: gi|88236841|gb|CI234692.1|CI234692
EST:     TCCTTGGCTGCCCCTACCGTAAGCCCTTTGGCGAGGTTCCTTCTTACAAG                         GTGGCAAAACCAAGTTTCCCAAGATCTTAACTCCGTCTGAAGACAATAC
genomic: TCCTTGGCTGCCCCTACCGTAAGCCCTTTGGCGAGGTTCCTTCTTACAAGgtttgtttag ... attggtgcagGTGGCAAAACCAAGTTTCCCAAGATCTTAACTCCGTCTGAAGACAATAC
EST: gi|88290287|gb|CI550509.1|CI550509
EST:     TCCTTGGCTGCCCCTACCGTAAGCCCTTTGGCGAGGTTCCTTCTTACAAG                         GTGGCAAAACCAAGTTTCCCAAGATCTTAACTCCGTCTGAAGAC
genomic: TCCTTGGCTGCCCCTACCGTAAGCCCTTTGGCGAGGTTCCTTCTTACAAGgtttgtttag ... attggtgcagGTGGCAAAACCAAGTTTCCCAAGATCTTAACTCCGTCTGAAGAC